GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD8270 Cluster: PREDICTED: hypothetical protein;...    34   4.6  
UniRef50_Q4PAF3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  
UniRef50_UPI0000510218 Cluster: COG0340: Biotin-(acetyl-CoA carb...    34   6.1  
UniRef50_Q5FRI6 Cluster: Isoleucyl-tRNA synthetase; n=4; Rhodosp...    33   8.0  

>UniRef50_UPI0000DD8270 Cluster: PREDICTED: hypothetical protein;
           n=3; Homo/Pan/Gorilla group|Rep: PREDICTED: hypothetical
           protein - Homo sapiens
          Length = 536

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 125 PSLHTGTLMSDNSFRLA----TCLRLGAPCCVQHHCQCGNIVDRFGYHGLSCVKSAGRIS 180
           PS H   + ++ ++ L+    TC+ +  P C      C N+ DR  Y G +      ++ 
Sbjct: 258 PSAHMTQVTAEETWSLSLAAFTCMSVQLPLCWGFGRFCWNLKDRLSYRGPAADSEIEKLG 317

Query: 181 RYASINDI 188
           RYA+ ++I
Sbjct: 318 RYANTHNI 325


>UniRef50_Q4PAF3 Cluster: Putative uncharacterized protein; n=1;
           Ustilago maydis|Rep: Putative uncharacterized protein -
           Ustilago maydis (Smut fungus)
          Length = 436

 Score = 34.3 bits (75), Expect = 4.6
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 5   IWSLASLPIKLGGLGIRKISCVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTE-ARN 63
           +WS ASL  +L  LG+  ISC  L   L S+    E  +  L+ P + P  T  TE + +
Sbjct: 244 VWSHASLNPQLLSLGVSDISCTNLELLLNSLSPPLEPPTMPLFSPAI-PLSTSSTEVSAS 302

Query: 64  EWLLTCPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCR 101
                  ++D+ T  TSQ+      C +   +L+ S R
Sbjct: 303 TSEPQLAHSDVATCSTSQQNGIGSFCNM-EYSLVSSAR 339


>UniRef50_UPI0000510218 Cluster: COG0340: Biotin-(acetyl-CoA
           carboxylase) ligase; n=1; Brevibacterium linens BL2|Rep:
           COG0340: Biotin-(acetyl-CoA carboxylase) ligase -
           Brevibacterium linens BL2
          Length = 324

 Score = 33.9 bits (74), Expect = 6.1
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 187 DIIRRALVSAGVPAILE-PNGLVRSDGKRSDGM--SIIPWKMGRSLVWDATCVDTMAPTH 243
           + +R A+  AGVPA+L+ PN ++  DGK+  G+   + P   G  +V        + P  
Sbjct: 129 EAVRSAIAEAGVPAVLKWPNDVLTEDGKKLCGILARVEPAPSGPRIVLGMGINTRLQPDD 188

Query: 244 LPXXXXXXXXXXXXXEG 260
           LP             +G
Sbjct: 189 LPRESASSIAIETDTDG 205


>UniRef50_Q5FRI6 Cluster: Isoleucyl-tRNA synthetase; n=4;
           Rhodospirillales|Rep: Isoleucyl-tRNA synthetase -
           Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 960

 Score = 33.5 bits (73), Expect = 8.0
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 48  LPLLDPKITYMTEARNEWLLTCPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTERA 107
           L  LD  +T++ EA    L +          + QR W  P+   + K   +  RD+    
Sbjct: 481 LSALD-NVTFVPEAARRRLTSMIEQRPDWCISRQRAWGVPIAVFVEKRTGEVLRDAAVMQ 539

Query: 108 RLL-AVAEWESGLWLQAHPSLHTG 130
           R++ A  E  + +W +A PSL  G
Sbjct: 540 RIVEAFREKGADIWYEADPSLFLG 563


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,645,041
Number of Sequences: 1657284
Number of extensions: 15057891
Number of successful extensions: 28283
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 28283
Number of HSP's gapped (non-prelim): 4
length of query: 339
length of database: 575,637,011
effective HSP length: 101
effective length of query: 238
effective length of database: 408,251,327
effective search space: 97163815826
effective search space used: 97163815826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 73 (33.5 bits)