Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996... 32 0.58
01_05_0014 - 17162664-17163500 32 0.58
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 31 1.0
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 3.1
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 5.4
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166... 29 7.1
08_02_1192 - 25102533-25104050 29 7.1
03_02_0840 + 11664382-11664516,11664629-11664737,11665579-116656... 29 7.1
09_04_0380 - 17117134-17118093 28 9.4
>03_02_0630 +
9964593-9964738,9965548-9965603,9965895-9966745,
9966848-9967046,9967246-9967425,9967591-9967967,
9968625-9968765
Length = 649
Score = 32.3 bits (70), Expect = 0.58
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 192 ALVSAGVPAILEPNGLVRSDGKRSDGMSIIPWK-------MGRSLVWDA 233
AL+S GVPA++ P L+ + GK+S + + W GR+ +WDA
Sbjct: 564 ALIS-GVPAVIHPGALILAVGKQSPPIFALYWDKKLQFSLQGRTALWDA 611
>01_05_0014 - 17162664-17163500
Length = 278
Score = 32.3 bits (70), Expect = 0.58
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 28 LPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEWLLTCPNTDLPTVPTSQRLWDEP 87
+P S +STY L + L P YM E N L T P L TVP S ++W P
Sbjct: 7 IPYIGSSSNSTYNLNGEPTPANQLIPVEHYMMEGVNA-LWTQP---LATVPGSLQIWSPP 62
Query: 88 LCELIRKN 95
L+R N
Sbjct: 63 ASSLVRPN 70
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 31.5 bits (68), Expect = 1.0
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 184 SINDIIRRALVSAGVPAILEPNGLVRSDGK 213
++ DIIR+ L++ + I++P+ ++R DGK
Sbjct: 472 ALTDIIRKGLLARALSTIVDPSKMIRMDGK 501
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.9 bits (64), Expect = 3.1
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 20 IRKISCVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEWLLTCPNTD 73
+RKI C + A HS Y +KI+ +PL + + RN TCPN D
Sbjct: 516 LRKI-CTGIQAQRSMKHSDYNFCNKIVQIPLSYGE----DKPRNHLSRTCPNKD 564
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 29.1 bits (62), Expect = 5.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 28 LPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEWLLTCPN 71
LP +LG + EL+ + ++ L P I +T ++ L+TC N
Sbjct: 2144 LPEWLGEMSCLTELIVETYWMEALHPCIRRLTNLQSLTLITCLN 2187
>11_05_0069 -
18814789-18815326,18815742-18816001,18816077-18816631,
18816907-18817062
Length = 502
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 142 TCLRLGAPCCVQHHCQ-CGNIVDRFGYH 168
TCL P C HC C N VDRF +H
Sbjct: 202 TCLLYRPPRC--SHCSVCNNCVDRFDHH 227
>08_02_1192 - 25102533-25104050
Length = 505
Score = 28.7 bits (61), Expect = 7.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 261 LKRRKYENLSKDFIFVPFGV-ETLSPWGPSAKSFFKDLKKNFLRPRETRRPVHILHKELA 319
L+R + + KDF F+PFG L P P + + + L E R PV + + L
Sbjct: 420 LQRAEVDFRGKDFEFIPFGAGRRLCPGLPMTERVVPFILASLLHAFEWRLPVGVAAETLD 479
Query: 320 L 320
L
Sbjct: 480 L 480
>03_02_0840 +
11664382-11664516,11664629-11664737,11665579-11665676,
11665757-11665825,11665921-11666036,11666113-11666167,
11666250-11666370,11666461-11666603,11666691-11666792
Length = 315
Score = 28.7 bits (61), Expect = 7.1
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 46 LYLPLLDPKITYMTEARNEWLLTCPNTDLPTVPTSQRLWDE 86
L +P ++ + R W L PN D+P P LW E
Sbjct: 125 LQIPFDGSRVEHQDALRQLWRLAYPNRDIP--PLKSELWKE 163
>09_04_0380 - 17117134-17118093
Length = 319
Score = 28.3 bits (60), Expect = 9.4
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 165 FGYHGLSCVKSAGRISRYASINDIIRRA-LVSAGVPAILEPNGLVRSDGKRSDGMSIIPW 223
F + G V SA R+ +INDI+ RA L++ V L P L+ D + + W
Sbjct: 81 FFHGGYFVVGSASCPKRHRNINDIVARARLIAVSVDYRLAPEHLL--PAAYDDSWAALNW 138
Query: 224 KMGRSLVWDATCVDT 238
+ + W + DT
Sbjct: 139 ALSGADPWLSEHGDT 153
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,284,136
Number of Sequences: 37544
Number of extensions: 417397
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 779
Number of HSP's gapped (non-prelim): 9
length of query: 339
length of database: 14,793,348
effective HSP length: 82
effective length of query: 257
effective length of database: 11,714,740
effective search space: 3010688180
effective search space used: 3010688180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -