Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05) 33 0.44
SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43) 32 0.58
SB_10375| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.8
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.1
SB_11156| Best HMM Match : Ets (HMM E-Value=1.3) 29 5.4
SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_27456| Best HMM Match : Ank (HMM E-Value=2.2e-20) 28 9.5
SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48) 28 9.5
>SB_11801| Best HMM Match : DEAD (HMM E-Value=5e-05)
Length = 1442
Score = 32.7 bits (71), Expect = 0.44
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 13/140 (9%)
Query: 57 YMTEARNEWLLTCPNT--DLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTER---ARLLA 111
Y+ E ++W++ + D V + Q+ E++ K+ D RD R L
Sbjct: 337 YVNEKVDKWIVVQSHQLPDDSVVKSLQQAVKSERAEVL-KDRADGVRDEAPRNIHRALDL 395
Query: 112 VAEWESGLWLQAHPSLHTGTLMSDNSFRLATCLRLGAPC-CVQHHCQCGNIVDRFGY-HG 169
AE S +WL+ P G ++ FR A LR P + C CG D+F H
Sbjct: 396 AAEKGSSVWLKVLPLREMGYNLNKGEFRDAIKLRYDWPINDIPTTCVCG---DKFTVDHA 452
Query: 170 LSCVKSAGRIS-RYASINDI 188
+ C K G IS R+ + D+
Sbjct: 453 MIC-KRGGFISQRHNELRDL 471
>SB_43766| Best HMM Match : RVT_1 (HMM E-Value=0.43)
Length = 491
Score = 32.3 bits (70), Expect = 0.58
Identities = 32/102 (31%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 92 IRKNLLDSCRDSTERA--RLLAVA-EWESGLWLQAHPSLHTGTLMSDNSFRLATCLRLGA 148
+ K D RD R R LA+A E S +WL P G ++ FR A LR
Sbjct: 313 VLKERADGIRDEAPRNIHRALALAAEKGSSVWLTVLPLREMGYNLNKGEFRDAIKLRYDW 372
Query: 149 PC-CVQHHCQCGNIVDRFGYHGLSCVKSAGRIS-RYASINDI 188
P + C CG D+F + K G IS R+ + D+
Sbjct: 373 PINDIPTTCMCG---DKFTVNHAMICKRGGFISQRHNELRDL 411
>SB_10375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 30.7 bits (66), Expect = 1.8
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 92 IRKNLLDSCRDSTER---ARLLAVAEWESGLWLQAHPSLHTGTLMSDNSFRLATCLRLGA 148
+ K D RD +R L AE S +WL P G ++ FR A LR
Sbjct: 53 VLKERADGIRDEAQRNIHCALDLAAEKGSSVWLTVLPLREMGYNLNKGGFRDAIKLRYDW 112
Query: 149 PC-CVQHHCQCGNIVDRFGY-HGLSCVKSAGRIS-RYASINDI 188
P + C CG D+F H + C K G IS R+ + D+
Sbjct: 113 PINDIPTTCVCG---DKFTVDHAMIC-KRRGFISQRHNELRDL 151
>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.9 bits (64), Expect = 3.1
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 24 SCVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEWLLTCP--NTDLPTVPT-S 80
S + +P+ + T L S + Y LDP +TY T + + P NT + P +
Sbjct: 372 SHIRIPSTQPAFTYTTPLDSALTYTTPLDPALTYSTPLDSAHIFDSPRHNTHIFDSPRHN 431
Query: 81 QRLWDEPLCELIRKNLLDSCRDSTER 106
++D P L+ ++ DS R++T +
Sbjct: 432 TNIFDSP---LLSNHIFDSPRNNTHK 454
>SB_11156| Best HMM Match : Ets (HMM E-Value=1.3)
Length = 248
Score = 29.1 bits (62), Expect = 5.4
Identities = 32/103 (31%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 92 IRKNLLDSCRDSTER---ARLLAVAEWESGLWLQAHPSLHTGTLMSDNSFRLATCLRLGA 148
+ K D RD R L AE S +WL P G ++ FR A LR
Sbjct: 4 VLKERADGIRDEASRNIHRALDLAAEKGSSVWLTVLPLSEIGYNLNKGGFRDAIKLRYDW 63
Query: 149 PC-CVQHHCQCGNIVDRFGY-HGLSCVKSAGRIS-RYASINDI 188
P + C CG D F H + C K G IS R+ + D+
Sbjct: 64 PINDIPTTCVCG---DNFTVDHAMIC-KRGGFISQRHNELRDL 102
>SB_21615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 RNEWLLTCPNTDLPTVPTSQ--RLWDEPLC-ELIRKNLLDSCRDST 104
R E + P T P+ P+ + R P+C + +RK+ L SCRD T
Sbjct: 18 RTENKVKLPTTGYPSSPSRRVNRCNRFPICVKKVRKSKLQSCRDET 63
>SB_27456| Best HMM Match : Ank (HMM E-Value=2.2e-20)
Length = 452
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 262 KRRKYENLSKDFIFVPFGVETLSPWGPSAKSFFKDLKKNFLRPRE 306
K E ++ F + VE +SP G +KS +D+K+N + PR+
Sbjct: 11 KTNPTEKVTPKRTFWRYVVEVVSPRGRKSKS--RDMKRNIISPRD 53
>SB_18464| Best HMM Match : AFG1_ATPase (HMM E-Value=0.48)
Length = 675
Score = 28.3 bits (60), Expect = 9.5
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 92 IRKNLLDSCRDSTERARLLAVAEWESGLWLQAHPSLHTGTLMSDNSFRLATCLRLGAPC- 150
I + D + RA LA AE S +WL P G ++ FR A LR P
Sbjct: 414 IADGIRDEAPRNIRRALDLA-AEKGSSVWLTVLPLREMGYNLNKGGFRDAIKLRYDWPIN 472
Query: 151 CVQHHCQCGNIVDRFGY-HGLSCVKSAGRIS-RYASINDI 188
+ C CG D F H + C K G IS R+ + D+
Sbjct: 473 DIPTTCVCG---DNFTVDHAMIC-KRGGFISQRHNELRDL 508
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.138 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,524,995
Number of Sequences: 59808
Number of extensions: 461400
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 10
length of query: 339
length of database: 16,821,457
effective HSP length: 83
effective length of query: 256
effective length of database: 11,857,393
effective search space: 3035492608
effective search space used: 3035492608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
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