GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical p...    30   2.7  
Z70306-5|CAA94326.1|  484|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    29   3.6  
Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical pr...    29   6.2  
U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alp...    29   6.2  

>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 101 RDSTERARLLAVAEWESGLWLQAHPSL--HTGTLMS--DNSFRLATCLRL 146
           +D  ER RLLA A W   LW + HP L  H  TL    +  +R A  LRL
Sbjct: 488 KDDMERPRLLAFAIWI--LWSRTHPDLLVHNFTLRERLEKVYRRACQLRL 535


>Z70311-11|CAA94380.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 25  CVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEW-LLTCPNTDL----PTVPT 79
           C+    FLG +   ++   ++  L L D     +TEA++ W ++ C    L    P   +
Sbjct: 367 CIIRSRFLGDIEHAFQKNKQLSNLLLDDFFTKAITEAQDSWRVVVCAAVRLGIPVPAFSS 426

Query: 80  SQRLWDEPLCELIRKNLLDSCRD 102
           +   +D    E++  NLL + RD
Sbjct: 427 ALAFYDGYTSEVVPANLLQAQRD 449


>Z70306-5|CAA94326.1|  484|Caenorhabditis elegans Hypothetical
           protein T25B9.9 protein.
          Length = 484

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 25  CVALPAFLGSVHSTYELVSKILYLPLLDPKITYMTEARNEW-LLTCPNTDL----PTVPT 79
           C+    FLG +   ++   ++  L L D     +TEA++ W ++ C    L    P   +
Sbjct: 367 CIIRSRFLGDIEHAFQKNKQLSNLLLDDFFTKAITEAQDSWRVVVCAAVRLGIPVPAFSS 426

Query: 80  SQRLWDEPLCELIRKNLLDSCRD 102
           +   +D    E++  NLL + RD
Sbjct: 427 ALAFYDGYTSEVVPANLLQAQRD 449


>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 159 GNIVDRFGYHGLSCVKSAGRISRYASINDIIRRALVSAGVPAILEPNGLVRSDGKRSD 216
           G I+     H L   K+  ++ +  +I D   RAL++   P   +P G   +DG   +
Sbjct: 840 GQIMYAATAHDLDLAKTVQQVKKGDTIKDPDSRALIAVSEPEARKPGGTEETDGDEDE 897


>Z81028-2|CAB02694.1|  996|Caenorhabditis elegans Hypothetical
           protein B0365.3 protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 67  LTCPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTERARLLAVAEWESGLWLQAHPS 126
           + C +     VP     ++E   +++++   D  RD     RL+++A  + G+ +QA   
Sbjct: 780 ILCIDLGTDMVPAISLAYEEAESDIMKRQPRDPIRDKLVNERLISLAYGQIGM-IQASAG 838

Query: 127 LHT-GTLMSDNSF 138
             T   +M+DN F
Sbjct: 839 FFTYFWIMADNGF 851


>U18546-1|AAB02615.1|  996|Caenorhabditis elegans Na,K-ATPase alpha
           subunit protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 67  LTCPNTDLPTVPTSQRLWDEPLCELIRKNLLDSCRDSTERARLLAVAEWESGLWLQAHPS 126
           + C +     VP     ++E   +++++   D  RD     RL+++A  + G+ +QA   
Sbjct: 780 ILCIDLGTDMVPAISLAYEEAESDIMKRQPRDPIRDKLVNERLISLAYGQIGM-IQASAG 838

Query: 127 LHT-GTLMSDNSF 138
             T   +M+DN F
Sbjct: 839 FFTYFWIMADNGF 851


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,407,814
Number of Sequences: 27539
Number of extensions: 338401
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 6
length of query: 339
length of database: 12,573,161
effective HSP length: 82
effective length of query: 257
effective length of database: 10,314,963
effective search space: 2650945491
effective search space used: 2650945491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)