GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000159-TA|BGIBMGA000159-PA|undefined
         (339 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56680.1 68414.m06519 glycoside hydrolase family 19 protein s...    29   5.9  

>At1g56680.1 68414.m06519 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 280

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 143 CLRLGAPC---CVQHHCQCGNIVDRFGYHGLSCVKSAGRISRYASINDIIRRALVSAGVP 199
           CL +G P    C  H   CG  V+  G+  LS      + S    +ND  R  + S   P
Sbjct: 31  CLTIGCPGINECCSHTGYCGTNVEHCGFWCLSGPCQLSKSSSSYRLNDGPRGKIESIVTP 90

Query: 200 AILEPNGLVRSDGKRSDG 217
           A+   + L+R  G    G
Sbjct: 91  ALF--HRLMRKVGSNCTG 106


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,820
Number of Sequences: 28952
Number of extensions: 326862
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 1
length of query: 339
length of database: 12,070,560
effective HSP length: 82
effective length of query: 257
effective length of database: 9,696,496
effective search space: 2491999472
effective search space used: 2491999472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)