GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000158-TA|BGIBMGA000158-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (564 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    25   1.8  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   7.5  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 509 CAMGSVVDSKMKVYGIDNLRVVDVSTMPFI 538
           C + + VD    ++GI  L ++  ST+ F+
Sbjct: 187 CELKNTVDDFNDIFGISFLLIISYSTLHFV 216



 Score = 22.2 bits (45), Expect = 9.9
 Identities = 19/71 (26%), Positives = 31/71 (43%)

Query: 321 HNALFLVNKLEESTATSETLPLTKFPFPILLASVNLDDSKSYADYLLIGLVFAQDKGYTD 380
           H+AL ++    +S      L LT     ++L+S++    KSY    L+  V      Y  
Sbjct: 10  HDALKILGIGPKSNKIYSFLLLTTLTLLVILSSIDRPYLKSYTYIKLVVSVLMDFIAYFF 69

Query: 381 VTCSTLFSFTD 391
              + LFS +D
Sbjct: 70  NFWTILFSRSD 80


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 62  YPSNESIMPGTFPLLQNS---YEDWNETSIPESTTKHQKIGAYKLSTGKALG--GGSTIN 116
           YPS+  +       L  S   Y+D N+ ++   TT+HQ    Y  +T   LG   G+T  
Sbjct: 353 YPSSNLMPLNNIQNLSQSGINYKDTNDNNVSAVTTQHQ---GYPTNTVTILGPNSGNTPK 409

Query: 117 HLLHL 121
            LL +
Sbjct: 410 ILLQI 414


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 396 NFSESVAGRNQFISLIGTSQPKSRGYVQLKSSDPDDKLVISESFYSDPED 445
           +FS +V G      LIG  + + RG  + K++   D   I+ +   D ED
Sbjct: 433 DFSGTVCGGQVKYPLIGAMREELRGISRGKNAKDVDWQKIAGAVEEDDED 482


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,386
Number of Sequences: 317
Number of extensions: 5560
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 564
length of database: 114,650
effective HSP length: 60
effective length of query: 504
effective length of database: 95,630
effective search space: 48197520
effective search space used: 48197520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)