Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000158-TA|BGIBMGA000158-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
(564 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 31 0.56
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 30 0.75
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 2.3
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 4.0
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 27 5.3
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 5.3
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 9.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 9.2
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 27 9.2
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 30.7 bits (66), Expect = 0.56
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 140 WSSANVR--KYFKKSENMLDADIMASHADYHGTEG-----PVMVSRQPDDATHNLLKAFS 192
WS+ N+R K + KS++ L + H D H ++VS+QP L F
Sbjct: 658 WSAKNLRPKKPYHKSQSYLSYLLQLGHIDLHKIGAFQATQILIVSKQPSPEAEELEDTFR 717
Query: 193 DIGVPTVIDLNADDNVGCAEASYI 216
+ +PT L +++ ++ ++
Sbjct: 718 EAAIPTFRGLEIPESLFLSQNVFV 741
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 30.3 bits (65), Expect = 0.75
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 29 FDFVVVGSGCGAIVADRLSENSSVRVLLIEA 59
FD++V+G G G + + R + +V LIEA
Sbjct: 8 FDYLVIGGGSGGLASARRAAKHGAKVALIEA 38
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 382 TCSTLFSFTDEICSNFSESVAGRNQFISLIGTSQPKSRGYVQLKSSDPDDKLVISESFY 440
+C +F + I + ES N+ S+IG QP + Q+K + D LVI + Y
Sbjct: 223 SCCIVFISSYSIFLSVKESKESENRIHSIIGAPQPVTVIRNQVKQTVLADDLVIGDLLY 281
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 13 YLFQWP-PQAIVQDGDTFDFVVVGSGCGAIVADRLSENSSVRVLLIEAGTYPSNESIMPG 71
Y F+ P P + D VV+G+G GA R + S V+++ Y S++P
Sbjct: 75 YRFRHPDPHQPLPDPSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLLPS 134
Query: 72 T 72
T
Sbjct: 135 T 135
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 5.3
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 264 ASGKKINVYA-SKEVIISAGSFNSPKILMLSGIGPADHLKSMGID 307
ASGK + A S+EVI S +F++ +IL +S + HL + +D
Sbjct: 499 ASGKVVLYDANSREVITSRWAFHTGRILGMSWNAKSTHLATASLD 543
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 62 YPSNESIMPGTFPLLQNSYEDWNETSIPE-STTKHQKIGAYKL 103
YP+ SI+PGTF L + E N +I + S + Q++ Y+L
Sbjct: 607 YPNFISIVPGTFALPDSLKEKQNLFAIQDISLDEPQRLSLYEL 649
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 254 DIAKGVILRLASGKKINVYASKEVIISAGSFNSPKILMLSGIGPADHLKSMGIDVIKDLP 313
D G++LR +K NV A+ E+ + + S ++ + + ADHL D ++ L
Sbjct: 121 DDPDGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNADHL-DKDDDFVRQLR 179
Query: 314 VGQ 316
+G+
Sbjct: 180 IGK 182
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 229 YLNKKTRDNLYVLTETLAEKIII 251
++N+K R + YV+T+ L E I I
Sbjct: 316 HINRKNRSDAYVITDVLDEPIFI 338
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 376 KGYTDVTCSTLFSFTDEICSNFSESVAGRNQFISLIGTSQPKSRGYVQLKSSDPDDKLVI 435
K Y C +S + E S FS + S + + ++Q PDDKL +
Sbjct: 229 KHYPPKICLHSYSGSIEQISQFSAHKVPTEFYYSFSIGINSRYKNFIQTLKGVPDDKL-L 287
Query: 436 SESFYSDPEDFTNMLKYLTHFLTIYNSAYFQDIKAEIA 473
+ES + +++ + ++ S F+D +I+
Sbjct: 288 AESDHHSASQIDELVRQSLNVMSEAKSWTFEDTITKIS 325
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,808
Number of Sequences: 5004
Number of extensions: 114239
Number of successful extensions: 319
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 12
length of query: 564
length of database: 2,362,478
effective HSP length: 76
effective length of query: 488
effective length of database: 1,982,174
effective search space: 967300912
effective search space used: 967300912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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