Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000158-TA|BGIBMGA000158-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 4e-11
SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08) 54 2e-07
SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.11
SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008) 34 0.26
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_45839| Best HMM Match : DUF1441 (HMM E-Value=0.82) 31 1.9
SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058) 31 3.3
SB_46604| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.7
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.5
SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2) 29 7.5
SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
SB_54776| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.9
SB_27780| Best HMM Match : Flavi_NS2A (HMM E-Value=1.3) 29 9.9
>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 66.9 bits (156), Expect = 4e-11
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 30 DFVVVGSG-CGAIVADRLSENSSVRVLLIEAGTYPSNESI-MPGTFPLLQNSYEDWNETS 87
D+V+ G+G G ++A+RLS + +VLL+EAG I MP L+ N +D
Sbjct: 165 DYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAA--LIYNLCDDKYNWY 222
Query: 88 IPESTTKHQKIGAYKLSTGKALGGGSTINHLLHLRGDKDDFDTWASYLGDDSWSSANVRK 147
+ KH G+ GG S++N ++++RG D+D W G WS A+
Sbjct: 223 YHTAPQKHMNNRVMYCPRGRVWGGSSSLNAMVYIRGHAYDYDRWERE-GAQGWSYADCLP 281
Query: 148 YFKKSE 153
YF+KS+
Sbjct: 282 YFRKSQ 287
>SB_19862| Best HMM Match : GMC_oxred_C (HMM E-Value=4.9e-08)
Length = 79
Score = 54.4 bits (125), Expect = 2e-07
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 502 LFHYSGTCAMG----SVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMAEK 553
+FH GTC MG +VVD K++V G+ LR+VD S MP I NT + IM+AEK
Sbjct: 16 IFHPVGTCKMGQDEDAVVDHKLRVRGLSGLRIVDASIMPTITSGNTNSPTIMIAEK 71
>SB_14978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 35.5 bits (78), Expect = 0.11
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 26 GDTFDFVVVGSG-CGAIVADRLSENSSVRVLLIEAGTYPSNE--SIMPGTFPLLQNSYED 82
GD +DF++ G G G I+A+RL+ + RVL++EAG + SI G LL N D
Sbjct: 9 GD-YDFIIAGGGTAGCILANRLTADGRHRVLMLEAGHEARSMWISIPAGFSKLLVN--PD 65
Query: 83 W 83
W
Sbjct: 66 W 66
>SB_21895| Best HMM Match : E1-E2_ATPase (HMM E-Value=0.008)
Length = 659
Score = 34.3 bits (75), Expect = 0.26
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 307 DVIKDLPVGQGMQDHNALFLVNKL-EESTATSETLPLTKFPFPILLASVNLDDSKSYAD- 364
DVI G M AL N + ES T E++P+TK P P +S N D+S + D
Sbjct: 184 DVIVIPAQGATMHCDAALISGNCIVNESMLTGESVPVTKTPLPSHTSSKNPDESHEFKDE 243
Query: 365 -YLLIG 369
Y L+G
Sbjct: 244 IYSLVG 249
>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1444
Score = 31.5 bits (68), Expect = 1.9
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 442 DPEDFT-NMLKYLTHFLTIYNSAYFQ---DIKAEIADPGLEECGEMDVSSEDYWKCYIKS 497
D +D+ ++LK L FL + F + KA + LE + ++++++ ++
Sbjct: 878 DSKDYNIDLLKPLPQFLPFNDFCMFNRKSERKALFLERKLEHIQDREITAQETLAQVLRV 937
Query: 498 MTVHLFHYSGTCAMGSVVDSKMKVYGIDNLRVVDVSTMPFI 538
+ VH Y C + VV K Y LRVV V T P++
Sbjct: 938 VRVHTKPY--VCHVLRVVRVPTKPYVCHVLRVVHVPTKPYV 976
>SB_45839| Best HMM Match : DUF1441 (HMM E-Value=0.82)
Length = 867
Score = 31.5 bits (68), Expect = 1.9
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 98 IGAYKLSTGKALGGGSTINHLLHLRGDKDDFDTWASYLGDDSWSSANVRKYFKKSENMLD 157
I AY S G +LG S + H R K F A Y D+W++A VR +
Sbjct: 680 INAYFRSAGGSLGDISGWS-ADHQRALKSQFV--AVYGSVDTWTTAEVRDTGAAIGGLTA 736
Query: 158 ADIMASHADYHGTEGPVMVSRQPDDATHNLLKAFSDIGVPTVIDLNADDNVGCAEASYII 217
+++ A AD+ P ++ P NL K FS + T +D + D V A+ +
Sbjct: 737 SELQALSADHVSMIKPTAIAEMP----ANLFKEFSTEQL-TALDSSQADFVTMAQMDALP 791
Query: 218 GD 219
D
Sbjct: 792 AD 793
>SB_21| Best HMM Match : NOC3p (HMM E-Value=0.0058)
Length = 423
Score = 30.7 bits (66), Expect = 3.3
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 157 DADIMASHADYHGTEGPVMVSRQPDDATHN--LLKAFSDIGVPTVIDLN-ADDNVGCAEA 213
D I H +YH VMV R DD +HN +L+ + + + L+ DDN +A
Sbjct: 297 DLLISLQHFNYHNNLIAVMVPRMDDD-SHNGQVLQVLLSLRINEMDVLSLRDDNNNLRQA 355
Query: 214 SYIIGDGVRQSTAYAYLNKKTRDNLY 239
+ G R+ A L+K+ R Y
Sbjct: 356 K-VKGQNKREKMAKGTLSKRDRKQKY 380
>SB_46604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 29.9 bits (64), Expect = 5.7
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 229 YLNKKTRDNLYVLTETLAEKIIIENDIAKGV-ILRLASGKKINVYASKEVIISAGSFNSP 287
Y NKKT + +++ TL + +++ + V I+ LA GK + VY +K+ I+S S
Sbjct: 165 YPNKKTI--VRIVSLTLGKVLLVYPNKKTIVRIVSLALGKVVLVYPNKKTIVSIVSLTLG 222
Query: 288 KILML 292
K+L++
Sbjct: 223 KVLLV 227
Score = 29.1 bits (62), Expect = 9.9
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 229 YLNKKTRDNLYVLTETLAEKIIIENDIAKGV--ILRLASGKKINVYASKEVIISAGSFNS 286
Y NKKT + LT +K+++ K + I+ L GK + VY +K+ I+S S
Sbjct: 42 YPNKKTIVRIVSLT---LDKVLLVYPNKKTIVRIVSLTLGKVLLVYPNKKTIVSIVSLTL 98
Query: 287 PKILML 292
K+L++
Sbjct: 99 GKVLLV 104
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 229 YLNKKTRDNLYVLTETLAEKIII-ENDIAKGVILRLASGKKINVYASKEVIISAGSFNSP 287
Y NKKT ++ LT + +++ N I+ L GK + VY +K+ I+S S
Sbjct: 375 YPNKKTIVSIVSLTLGKVKVLLVYPNKKTIVSIVSLTLGKVLLVYPNKKTIVSIVSLTLG 434
Query: 288 KILML 292
K+L++
Sbjct: 435 KVLLV 439
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 29.5 bits (63), Expect = 7.5
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 122 RGDKDDFDTWASYLGDDSWSSANVRKYFKKSENMLDADIMASHADYHGTEGPVMVSRQPD 181
+G D+ W + GD ++S V K SE + D A Y + + + +
Sbjct: 1085 KGHADEGKKWVKWFGDHTFSQVEVEKLKTLSEGLRTLDDKARKKKYRARKARISLEQAIS 1144
Query: 182 DATHNL 187
+A L
Sbjct: 1145 EAMKEL 1150
>SB_7302| Best HMM Match : DUF910 (HMM E-Value=2.2)
Length = 288
Score = 29.5 bits (63), Expect = 7.5
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 355 NLDDSKSYADYLLIGLVFAQDKGYTDVTCSTLFSFTDEICSNFSESVAGRNQFISLIGTS 414
NL+ S++D + LV + +D +T D C++ S++V+
Sbjct: 40 NLERKSSHSDKSIQNLVIHTENTSSDHHRNTPIILADSDCTDSSDAVSRPASAEPFASPP 99
Query: 415 QPKSRGYVQLKSSDPDDKLVISESFYSDPEDF 446
QPKS L+ +P++ + S+S D E F
Sbjct: 100 QPKSLRQRMLQKYNPENSVDDSDS--DDLESF 129
>SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.1 bits (62), Expect = 9.9
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 124 DKDDFDTWASYLGDDSWSSANVRKYFKKSENMLDA--DIMASHADYHGTEGPV 174
D DD+D + Y D + ++ ++ ++ D D H D++G +GP+
Sbjct: 321 DYDDYDDYDDYDDYDDYDPDDIYDDYEAYDDDFDGYDDFHEFHDDFYGVDGPI 373
>SB_54776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 407 FISLIGTSQPKSRGYVQLKSSDPDDKLVIS-ESFYSDPEDFTNMLKYLTHFLTIYNSAYF 465
F+ + GT + SR SDPD L+I ++ P L L + ++ A
Sbjct: 80 FVYVNGTDKHTSRYSTTCTYSDPDTHLIIGHDATTGSPSGRAVSLTGLAFYYSVLPQA-- 137
Query: 466 QDIKAEIADPGLEECGEMD 484
+++A+ PG+ + G+ D
Sbjct: 138 -NVQAQANSPGIGQTGDKD 155
>SB_54200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 460 YNSAYFQDIKAEIADPGLEECGEMDVSSEDYWKCYIKSMTVHLFHYSGTCAMGSVVDSKM 519
Y Y DI + A ++E + E Y K + H+ + S A+ VD+
Sbjct: 649 YQGVYISDIPPKQAQSTIQE---QNRPLESYLKAVAAHVMSHMINPSVQSAVKGSVDASS 705
Query: 520 KVYGIDNLRVVDVSTMPFIVRANT 543
V G + D + +P +V T
Sbjct: 706 PVQGTSQMATSDANGLPPMVHQRT 729
>SB_27780| Best HMM Match : Flavi_NS2A (HMM E-Value=1.3)
Length = 400
Score = 29.1 bits (62), Expect = 9.9
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 229 YLNKKTRDNLYVLTETLAEKIII-ENDIAKGVILRLASGKKINVYASKEVIISAGSFNSP 287
Y NKKT ++ LT + +++ N I+ L GK + VY +K+ I+S S
Sbjct: 101 YPNKKTIVSIVSLTLGKVKVLLVYPNKKTIVSIVSLTLGKVLLVYPNKKTIVSIVSLTLG 160
Query: 288 KILML 292
K+L++
Sbjct: 161 KVLLV 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.134 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,273,663
Number of Sequences: 59808
Number of extensions: 770488
Number of successful extensions: 1846
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 51
length of query: 564
length of database: 16,821,457
effective HSP length: 86
effective length of query: 478
effective length of database: 11,677,969
effective search space: 5582069182
effective search space used: 5582069182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -