GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000158-TA|BGIBMGA000158-PA|IPR000172|Glucose-methanol-
choline oxidoreductase, N-terminal, IPR007867|Glucose-methanol-choline
oxidoreductase, C-terminal, IPR012132|Glucose-methanol-choline
oxidoreductase
         (564 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   229   6e-62
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   0.95 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   0.95 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   0.95 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.95 

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  229 bits (559), Expect = 6e-62
 Identities = 174/551 (31%), Positives = 269/551 (48%), Gaps = 26/551 (4%)

Query: 28  TFDFVVVGSGCG-AIVADRLSENSSVRVLLIEAGTYPSNESIMPGTFPLLQNSYEDWNET 86
           ++DF+VVG G   A+VA RLSE S+ +VLL+EAG      + +P    L      DW   
Sbjct: 68  SYDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLYLGGDLDWKYY 127

Query: 87  SIPESTTKHQKIGAYKLSTGKALGGGSTINH-LLHLRGDKDDFDTWASYLGDDSWSSANV 145
           +  ES       G+     GK LGG +T++H + + RG + D++ W    G   WS   V
Sbjct: 128 TTNESHACLSTGGSCYWPRGKNLGG-TTLHHGMAYHRGHRKDYERWVQQ-GAFGWSWDEV 185

Query: 146 RKYFKKSENMLDADIMASHADYHGTEGPVMVSRQPDDATH--NLLKAFSDIGVPTVIDLN 203
             Y+ KSEN  + ++      YH + G + V R P        +LKA  + G     DL+
Sbjct: 186 MPYYLKSEN--NTELSRVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEEAGFGVSEDLS 243

Query: 204 ADDNVGCAEASYIIGDGVRQSTAYAYLNK-KTRDNLYVLTETLAEKIIIENDIAKGVILR 262
            D   G   A  I  +GVR S+A A++   + R NL+V+      K+   N  A GV + 
Sbjct: 244 GDRINGFTVAQTISRNGVRLSSARAFITPFENRSNLHVIVNATVTKVRTLNKRATGVNV- 302

Query: 263 LASGKKINVYASKEVIISAGSFNSPKILMLSGIGPADHLKSMGIDVIKDLP-VGQGMQDH 321
           L +G++  ++A +EVI+SAGS N+P++LMLSGIGP +HL+S+GI V+ DLP VG+ + +H
Sbjct: 303 LINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNH 362

Query: 322 NALFLVNKLEESTATSETLPLTKFPFPILLASVNLDDSKSYADYLLIGLVFAQDKGYTDV 381
            +  +   L E      T   T      L        S   A   + G+  +      D 
Sbjct: 363 QSFGMDFSLNED--FYPTFNQTNVD-QYLYNQTGPLSSTGLAQ--VTGIWHSNLTTPDDP 417

Query: 382 TCSTLFSFTDEICS---NFSESVAGRNQFISLIGTS-QPKSRGYVQLKSSDPDDKLVISE 437
                F+    IC      ++  A   Q + +   + QP S+G + L S DP D  VI  
Sbjct: 418 DIQIFFAGYQAICKPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSKDPLDPPVIWS 477

Query: 438 SFYSDPEDFTNMLKYLTHFLTIYNSAYFQDIKAEIADPGLEECGEMDVSSEDYWKCYIKS 497
           +  +   D + M++ +     + N+   +D+  E     L++C E    S+DYW C I+ 
Sbjct: 478 NDLATEHDRSVMIQAIRVVQKLVNTTVMRDLGVEFQKIELKQCDEFVEDSDDYWNCVIQY 537

Query: 498 MTVHLFHYSGTCAMG------SVVDSKMKVYGIDNLRVVDVSTMPFIVRANTLAAGIMMA 551
            T    H +GT  MG      +VV  ++KV+GI  LRV D S  P ++  N +A+  M+ 
Sbjct: 538 NTRAENHQTGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVG 597

Query: 552 EKISDDIKNEY 562
           E+ +D IK ++
Sbjct: 598 ERAADFIKEDW 608


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 492 KCYIKSMTVHLFHYSGTCAMGSVVDSKMKVYGIDNL 527
           K  IKS       +SG+CA G+ +DSK+    + NL
Sbjct: 517 KGLIKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 492 KCYIKSMTVHLFHYSGTCAMGSVVDSKMKVYGIDNL 527
           K  IKS       +SG+CA G+ +DSK+    + NL
Sbjct: 517 KGLIKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 492 KCYIKSMTVHLFHYSGTCAMGSVVDSKMKVYGIDNL 527
           K  IKS       +SG+CA G+ +DSK+    + NL
Sbjct: 517 KGLIKSENEAADFFSGSCAPGAPLDSKLCQQCVGNL 552


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 345 FPFPILLASVNLDDSKSYADYLLIGLVFAQDKGYTDVTC 383
           FP P  LAS N+     Y+  L I  + A+  G  D TC
Sbjct: 653 FPLPPNLASANISQLDPYSSLLSITNLAAEHSG--DYTC 689


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,416
Number of Sequences: 429
Number of extensions: 6179
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 564
length of database: 140,377
effective HSP length: 61
effective length of query: 503
effective length of database: 114,208
effective search space: 57446624
effective search space used: 57446624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)