GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000157-TA|BGIBMGA000157-PA|IPR004827|Basic-leucine
zipper (bZIP) transcription factor, IPR008917|Eukaryotic transcription
factor, DNA-binding, IPR004826|Maf transcription factor
         (122 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    31   0.003
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.21 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    22   1.5  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   4.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   7.8  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 31.1 bits (67), Expect = 0.003
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 4   SPTPCAEISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIE 63
           SPTP  +++     S++V D N +      TR+Q+ R++   +      Y +  R   + 
Sbjct: 49  SPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLE---KEFFKENYVSRPRRCELA 105

Query: 64  QKDELENEKSQEWHDMELMQDENNRI 89
            +  L     + W     M+D+  R+
Sbjct: 106 AQLNLPESTIKVWFQNRRMKDKRQRM 131


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.0 bits (52), Expect = 0.21
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 14  DELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNR 51
           D LV +  +D+ R  +     +D+IV ++Q + TLK++
Sbjct: 322 DVLVDMCEQDIIRIDRNTRFNQDKIVALRQEQETLKSQ 359



 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 30  MRGLTRDQIVRMKQRRRTLKNRGYAASCRI-KRIEQKDELENEKSQEW 76
           ++G++      +++ R  +   G   S  I K+ E K+E+E+E   +W
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKEVKEEIEDEPDHKW 229


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 36  DQIVRMKQRRRTLKNRGYAASCRIKRIE 63
           DQIV +  + +++ N+     C +K+IE
Sbjct: 224 DQIVVILSKVKSILNKKCCEKCGLKKIE 251


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 22  RDLNRQLKMRGLTRDQIVRMKQR 44
           RDLNR++    L+ D + R + R
Sbjct: 292 RDLNREVDQIRLSLDDMDRWRDR 314


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 57  CRIKRIEQKDELENEK 72
           C +KR E+K + E +K
Sbjct: 264 CAVKRKEKKAQKEKDK 279


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,418
Number of Sequences: 317
Number of extensions: 875
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 122
length of database: 114,650
effective HSP length: 50
effective length of query: 72
effective length of database: 98,800
effective search space:  7113600
effective search space used:  7113600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)