Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
(99 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09) 96 4e-21
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 1e-19
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 4e-19
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 4e-15
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.022
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.36
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.47
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.9
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 27 1.9
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14) 26 5.8
>SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)
Length = 243
Score = 96.3 bits (229), Expect = 4e-21
Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 4/76 (5%)
Query: 6 QVLQQAGNIDRLGRFLWSLPAC----ERLHAHESVLKAKAMVAFHRGNFKELYRLLESHN 61
+ L+++G+++RL RFLWSLP E L HESVL+A+A+VAFH GNF++LY +LE+H
Sbjct: 20 ETLEESGDVERLARFLWSLPVAPGTLEALGKHESVLRARAIVAFHMGNFRDLYHILETHR 79
Query: 62 FSAHNHAKLQSLWLKA 77
F+ +HAKLQ++WL+A
Sbjct: 80 FTRESHAKLQAMWLEA 95
>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Query: 6 QVLQQAGNIDRLGRFLWSLPA-CERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSA 64
+ LQ +GNI+RL RFLWSLP E +HA E++L AKA+VAFH+ NFKELY +LES F
Sbjct: 73 ECLQNSGNIERLARFLWSLPKDSEEIHACETILVAKAVVAFHQNNFKELYSILESRKFQR 132
Query: 65 HNHAKLQSLWLKA 77
H KLQ LW A
Sbjct: 133 SEHEKLQCLWRTA 145
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 89.4 bits (212), Expect = 4e-19
Identities = 39/70 (55%), Positives = 54/70 (77%)
Query: 8 LQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNH 67
L+QAG+I+RL RFLWSLP + L+ ESVLKA+A+V+FHRG ++E+Y +LE++ F +H
Sbjct: 31 LRQAGDIERLSRFLWSLPPDDLLNGSESVLKARAIVSFHRGRYREVYNILETNEFDPSSH 90
Query: 68 AKLQSLWLKA 77
LQ LW KA
Sbjct: 91 ELLQCLWYKA 100
>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1062
Score = 76.2 bits (179), Expect = 4e-15
Identities = 35/74 (47%), Positives = 51/74 (68%)
Query: 4 PYQVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFS 63
P Q+ + G+I RL +FL S+P + + ES+LKA+AMVAFHRG ++E+Y +LE++ F
Sbjct: 748 PQQLADKEGDIKRLSQFLLSIPQEDLQNKSESLLKARAMVAFHRGCYQEVYNILENNKFD 807
Query: 64 AHNHAKLQSLWLKA 77
+H LQ LW KA
Sbjct: 808 TSSHEFLQCLWYKA 821
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 17 LGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLW 74
L FL +LP E+ E++ +++A + F R + LY+LL+ + F+ + L LW
Sbjct: 43 LEMFLSTLPNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFT--DAEDLVKLW 98
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 30 LHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFS 88
+ E L K +++E++RLLE H AK Q + + TK K + N S
Sbjct: 5852 IQTKEEALAEKEKEPIPDDDYEEVHRLLEEHKVFQEEMAKKQPSYDRLTKSAKRRTNGS 5910
>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.5 bits (63), Expect = 0.47
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 37 LKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSL 73
++AK ++ + N+KE Y++LE F HN+ K Q +
Sbjct: 339 MEAKQLLNKTKPNYKEAYKILEEAAF-VHNYTKAQEM 374
>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 34 ESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAK--LQSLWLKATKKRKLQANFSLD 90
+S + A + + ++ + L+ L S F A A+ Q+ WL+ + K+ L+ F+LD
Sbjct: 186 DSQISASSHLQYYEPHQARLHLLASSKGFGAWCAAQNQAQNEWLQVSHKQNLKYRFNLD 244
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 23 SLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRK 82
S + + LHA + ++ ++ F + YR L + NH+K ++ +T+ RK
Sbjct: 212 SKASLKELHASIGITPSEILIKMQTMTFVDTYRALLD---LSRNHSKNSTVSKNSTRARK 268
Query: 83 LQANFSLDLRI 93
L D+ I
Sbjct: 269 LHDQIDTDVPI 279
>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
Length = 334
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 45 FHRGNFKELYR-LLESHNFSAHNHAKLQSLW 74
F N KEL LL+ HNF H L +W
Sbjct: 230 FEPANDKELAEDLLDIHNFIKERHLTLGQIW 260
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,494
Number of Sequences: 59808
Number of extensions: 89862
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 10
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)
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