Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
         (99 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L31626-1|AAA21800.1|  416|Drosophila melanogaster homeodomain-co...   128   2e-30
BT029256-1|ABK30893.1|  416|Drosophila melanogaster FI01103p pro...   128   2e-30
AE013599-403|AAF59260.1|  416|Drosophila melanogaster CG11121-PA...   128   2e-30
AY061077-1|AAL28625.1|  487|Drosophila melanogaster LD05472p pro...    82   1e-16
AF099184-1|AAD39863.1|  292|Drosophila melanogaster homeobox pro...    82   1e-16
AE013599-571|AAF59147.3|  487|Drosophila melanogaster CG18455-PA...    82   1e-16
BT028852-1|ABI34233.2|  392|Drosophila melanogaster RT01127p pro...    81   2e-16
BT028820-1|ABI34201.2|  392|Drosophila melanogaster RT01027p pro...    81   2e-16
AF247709-1|AAF63760.1|  392|Drosophila melanogaster myotonix pro...    81   2e-16
AF099185-1|AAD39864.1|  392|Drosophila melanogaster homeobox pro...    81   2e-16
AE014296-3418|AAN12144.1|  392|Drosophila melanogaster CG3871-PB...    81   2e-16
AE014296-3417|AAF51640.3|  392|Drosophila melanogaster CG3871-PA...    81   2e-16

>L31626-1|AAA21800.1|  416|Drosophila melanogaster
           homeodomain-containing protein protein.
          Length = 416

 Score =  128 bits (308), Expect = 2e-30
 Identities = 57/72 (79%), Positives = 66/72 (91%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           +VLQQAGNI+RLGRFLWSLP C++L  +ESVLKAKA+VAFHRG +KELYRLLE H+FSA 
Sbjct: 113 EVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQ 172

Query: 66  NHAKLQSLWLKA 77
           NHAKLQ+LWLKA
Sbjct: 173 NHAKLQALWLKA 184


>BT029256-1|ABK30893.1|  416|Drosophila melanogaster FI01103p
           protein.
          Length = 416

 Score =  128 bits (308), Expect = 2e-30
 Identities = 57/72 (79%), Positives = 66/72 (91%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           +VLQQAGNI+RLGRFLWSLP C++L  +ESVLKAKA+VAFHRG +KELYRLLE H+FSA 
Sbjct: 113 EVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQ 172

Query: 66  NHAKLQSLWLKA 77
           NHAKLQ+LWLKA
Sbjct: 173 NHAKLQALWLKA 184


>AE013599-403|AAF59260.1|  416|Drosophila melanogaster CG11121-PA
           protein.
          Length = 416

 Score =  128 bits (308), Expect = 2e-30
 Identities = 57/72 (79%), Positives = 66/72 (91%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           +VLQQAGNI+RLGRFLWSLP C++L  +ESVLKAKA+VAFHRG +KELYRLLE H+FSA 
Sbjct: 113 EVLQQAGNIERLGRFLWSLPQCDKLQLNESVLKAKAVVAFHRGQYKELYRLLEHHHFSAQ 172

Query: 66  NHAKLQSLWLKA 77
           NHAKLQ+LWLKA
Sbjct: 173 NHAKLQALWLKA 184


>AY061077-1|AAL28625.1|  487|Drosophila melanogaster LD05472p
           protein.
          Length = 487

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 4/76 (5%)

Query: 6   QVLQQAGNIDRLGRFLWSLP-ACERLHAH---ESVLKAKAMVAFHRGNFKELYRLLESHN 61
           + L+ +G+I+RL RFLWSLP A   +H     E+VL+A+A+VA+H GNF+ELY ++E+H 
Sbjct: 47  KTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYAIIENHK 106

Query: 62  FSAHNHAKLQSLWLKA 77
           F+  ++ KLQ++WL+A
Sbjct: 107 FTKASYGKLQAMWLEA 122


>AF099184-1|AAD39863.1|  292|Drosophila melanogaster homeobox
           protein SIX3 protein.
          Length = 292

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 4/76 (5%)

Query: 6   QVLQQAGNIDRLGRFLWSLP-ACERLHAH---ESVLKAKAMVAFHRGNFKELYRLLESHN 61
           + L+ +G+I+RL RFLWSLP A   +H     E+VL+A+A+VA+H GNF+ELY ++E+H 
Sbjct: 47  KTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYAIIENHK 106

Query: 62  FSAHNHAKLQSLWLKA 77
           F+  ++ KLQ++WL+A
Sbjct: 107 FTKASYGKLQAMWLEA 122


>AE013599-571|AAF59147.3|  487|Drosophila melanogaster CG18455-PA,
           isoform A protein.
          Length = 487

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 37/76 (48%), Positives = 58/76 (76%), Gaps = 4/76 (5%)

Query: 6   QVLQQAGNIDRLGRFLWSLP-ACERLHAH---ESVLKAKAMVAFHRGNFKELYRLLESHN 61
           + L+ +G+I+RL RFLWSLP A   +H     E+VL+A+A+VA+H GNF+ELY ++E+H 
Sbjct: 47  KTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFRELYAIIENHK 106

Query: 62  FSAHNHAKLQSLWLKA 77
           F+  ++ KLQ++WL+A
Sbjct: 107 FTKASYGKLQAMWLEA 122


>BT028852-1|ABI34233.2|  392|Drosophila melanogaster RT01127p
           protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


>BT028820-1|ABI34201.2|  392|Drosophila melanogaster RT01027p
           protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


>AF247709-1|AAF63760.1|  392|Drosophila melanogaster myotonix
           protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


>AF099185-1|AAD39864.1|  392|Drosophila melanogaster homeobox
           protein SIX4 protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


>AE014296-3418|AAN12144.1|  392|Drosophila melanogaster CG3871-PB,
           isoform B protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


>AE014296-3417|AAF51640.3|  392|Drosophila melanogaster CG3871-PA,
           isoform A protein.
          Length = 392

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 40/75 (53%), Positives = 51/75 (68%)

Query: 6   QVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAH 65
           + LQQ G+I++L  FL SLP  E    +ESVL+A+AMVA++ G F ELY LLE+H FS  
Sbjct: 191 EALQQKGDIEKLTTFLCSLPPSEFFKTNESVLRARAMVAYNLGQFHELYNLLETHCFSIK 250

Query: 66  NHAKLQSLWLKATKK 80
            H  LQ+LW KA  K
Sbjct: 251 YHVDLQNLWFKAHYK 265


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,323,953
Number of Sequences: 52641
Number of extensions: 135237
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 24,830,863
effective HSP length: 73
effective length of query: 26
effective length of database: 20,988,070
effective search space: 545689820
effective search space used: 545689820
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)