Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
         (99 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11230.1 68418.m01312 phosphate translocator-related low simi...    27   1.6  
At1g68580.2 68414.m07836 agenet domain-containing protein / brom...    27   2.8  
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi...    26   3.7  
At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...    26   3.7  
At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containi...    26   4.8  
At3g07425.1 68416.m00885 expressed protein                             25   6.4  
At2g47120.1 68415.m05885 short-chain dehydrogenase/reductase (SD...    25   8.5  
At1g73200.1 68414.m08471 expressed protein                             25   8.5  
At1g19790.1 68414.m02475 lateral root primordium (LRP) protein-r...    25   8.5  

>At5g11230.1 68418.m01312 phosphate translocator-related low
           similarity to phosphoenolpyruvate/phosphate translocator
           precursor [Mesembryanthemum crystallinum] GI:9295275,
           SP|P52178 Triose phosphate/phosphate translocator,
           non-green plastid, chloroplast precursor (CTPT)
           {Brassica oleracea}
          Length = 351

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 65  HNHAKLQSLWLKATKKRKLQ 84
           +NHAKLQ+L  K  +K+K+Q
Sbjct: 305 YNHAKLQALKAKEEEKKKIQ 324


>At1g68580.2 68414.m07836 agenet domain-containing protein /
           bromo-adjacent homology (BAH) domain-containing protein
           contains Pfam profile PF01426: BAH domain and PF05641:
           Agenet domain
          Length = 648

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 40  KAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQ 84
           K M AFHR + ++    L+    +  + + + S  L  TKK++++
Sbjct: 489 KKMSAFHRNDLRQSREWLDDEWLNIRSRSDIVSSVLSLTKKKEME 533


>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 583

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 48  GNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIAKTL 97
           G   E Y+ +  H   A   A   +LW       K+  N+ L + IAK L
Sbjct: 360 GFLDEAYKFI--HQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRL 407


>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 36  VLKAKAMVAFHRGNFKELYR-LLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIA 94
           +L  KA+   H GNF+E    LLE+ N  A +   L +L + +    K  + +   L+++
Sbjct: 208 ILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETLANLVVCSLHVGKSSSRYLNQLKLS 267


>At1g79540.1 68414.m09272 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 780

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 34  ESVLKAKAMVAFHR-GNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLR 92
           +SV     +   HR G  +E ++L  + +   H+ A  +SL   + +KRK+   F+L ++
Sbjct: 551 DSVTYNTLINGLHRVGREEEAFKLFYAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMK 610

Query: 93  IAKTL 97
             K +
Sbjct: 611 YLKKI 615


>At3g07425.1 68416.m00885 expressed protein
          Length = 98

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 7  VLQQAGNIDRLGRFLWSLP 25
          +L   GN+  L  +LWSLP
Sbjct: 70 ILSNGGNVKFLDAYLWSLP 88


>At2g47120.1 68415.m05885 short-chain dehydrogenase/reductase (SDR)
           family protein similar to
           3-beta-hydroxysteroiddehydrogenase GI:15983819 from
           [Digitalis lanata]
          Length = 258

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 28  ERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANF 87
           E L  + +VL  K   +F+R +      + ++  F+   H KL  L+  A     L++  
Sbjct: 42  EELGQNVAVLIGKDKASFYRCDVTNETEVEDAVKFTVEKHGKLDVLFSNAGVLEPLESFL 101

Query: 88  SLDL 91
             DL
Sbjct: 102 DFDL 105


>At1g73200.1 68414.m08471 expressed protein
          Length = 779

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 19  RFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKAT 78
           RF+WS    E    + + L A A  +F + +    +  L+    +    +K++ +W K +
Sbjct: 197 RFIWSTKLKEDFRNYLASLNA-AYPSFMKPSAGFSFESLDKGLKADGPSSKVRLIWKKFS 255

Query: 79  KKRKLQANFSLDLR 92
           KK   + NF   +R
Sbjct: 256 KKCSTKVNFPPSIR 269


>At1g19790.1 68414.m02475 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 345

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 58  ESHNFSAHNHAKLQSLWLKATKKRKLQANFSL 89
           +S  F    H K  S W+ A K+R+ QA  ++
Sbjct: 140 KSRGFDCQTHVK--STWVSAAKRRERQAQLAV 169


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,756
Number of Sequences: 28952
Number of extensions: 66617
Number of successful extensions: 237
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 9
length of query: 99
length of database: 12,070,560
effective HSP length: 70
effective length of query: 29
effective length of database: 10,043,920
effective search space: 291273680
effective search space used: 291273680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)