Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
(99 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 27 0.70
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 1.2
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 25 1.6
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 1.6
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 2.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 24 3.7
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 24 4.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 24 4.9
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 24 4.9
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 23 6.5
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 23 6.5
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 23 8.6
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 8.6
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 0.70
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 1 MIRPYQVLQQAGNIDRLGRFLWSLPACERL----HAHESVLKAK 40
M+ P++VL+ +G++D+ ++ PA + H E VL+A+
Sbjct: 73 MLTPHEVLKTSGHVDKFADWMCKDPATGEIFRADHLVEEVLEAR 116
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 1.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 31 HAHESVLKAKAM-VAFHRGNFKELYRLLESHNFS 63
+A+ESVL+ + A HR + LYRL+ S S
Sbjct: 49 NAYESVLRENGLNPARHRSYIRILYRLISSKKLS 82
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 1.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 54 YRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFS 88
Y LLE ++ +AH+H+ L + ++ +++ + N S
Sbjct: 114 YSLLEGYSVTAHDHSDTSPLPITSSNQKEGKKNVS 148
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 1.6
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 RPYQVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKEL 53
+P ++ + ++++L L S+P E +H H ++ + + F NF +L
Sbjct: 92 KPEPLVAELTDVEKLE--LKSIPVLESVHLHTKLIDGRPITNFASFNFLDL 140
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.0 bits (52), Expect = 2.1
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 41 AMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATK 79
A++ ++ +F ++ ++ S+ + H +L S W+ ATK
Sbjct: 188 ALILTYKQHFPDV--IVGSYTYRKHGSVRLDSEWIAATK 224
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.2 bits (50), Expect = 3.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 48 GNFKELYRLLESHNFSAHNH 67
G F ++R LESH FS H
Sbjct: 144 GLFPNIHRELESHGFSLPTH 163
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 23.8 bits (49), Expect = 4.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 47 RGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIAKT 96
+GN E+Y LE + F ++S TK +KL N L + I T
Sbjct: 341 KGNLPEVYTELEINYFLLRRLLGVKSGDKNTTKVQKLAKNEVLMVNIGST 390
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 23.8 bits (49), Expect = 4.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 28 ERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLK 76
+RL E LK + ++ RGN +ES ++S + K + LK
Sbjct: 943 DRLREEEEALKQEIELSSRRGNRPYPSSAVESPSYSGTSERKSKKQMLK 991
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 58 ESHNFSAHNHAKLQSLWLKATKKRK 82
++H+ S H KL+S +LK T K K
Sbjct: 47 DTHHSSKHELKKLKSHFLKDTLKHK 71
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 57 LESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDL 91
+ H++ N + K T+K KL NF ++L
Sbjct: 14 INKHSYQDENTLVGKQALSKGTEKTKLSTNFEINL 48
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 23.4 bits (48), Expect = 6.5
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 56 LLESHNFSAHNHAKLQSLWLKATKKRKLQANFSL 89
L+ H++ ++KL W+ T K NF L
Sbjct: 672 LMLQHSYHCKPNSKLNVFWMPGTHKDDEWKNFEL 705
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 23.0 bits (47), Expect = 8.6
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 14 IDRLGRFLWSLPACERLHAHESVLKAKAMVAF-HRGNFKELYRLLESHNFSAHNH 67
I ++ RF S + + ++ K +++ +RG FK++ ES+N A +H
Sbjct: 169 ITKMERFQLSKGEATKAGVFLNTVETKDCMSWLNRGEFKDIVSFYESNNGIAISH 223
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.0 bits (47), Expect = 8.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 36 VLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRK 82
+L K + +F L R + + N KLQSLW A K+++
Sbjct: 790 LLSRKRVRSFQAVAHGFLSRRHTEYELLSSNIIKLQSLWRTALKRKE 836
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 414,420
Number of Sequences: 5004
Number of extensions: 12941
Number of successful extensions: 41
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 2,362,478
effective HSP length: 63
effective length of query: 36
effective length of database: 2,047,226
effective search space: 73700136
effective search space used: 73700136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 47 (23.0 bits)
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