Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
(99 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0860 - 6514921-6515034,6515125-6515196,6515344-6515400,651... 29 0.61
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 29 0.61
01_06_1027 + 33912773-33912816,33913245-33913401,33913492-339135... 27 1.8
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 27 2.4
02_05_0170 - 26431937-26434282 26 4.3
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 26 5.6
06_03_1271 + 28883904-28884326,28885556-28886242 26 5.6
02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759 26 5.6
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 25 7.5
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 25 7.5
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 25 9.9
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 25 9.9
>06_01_0860 -
6514921-6515034,6515125-6515196,6515344-6515400,
6515512-6515650,6515737-6515921,6516043-6516126,
6516552-6516674,6518043-6518219,6518331-6518400,
6518478-6518574,6519022-6519097,6519240-6519329,
6519548-6519655,6520715-6520756,6520854-6521045,
6521239-6521309,6521396-6521550,6521999-6522064,
6522769-6522820,6523476-6523566,6523897-6524094,
6524173-6524267,6524361-6524485,6524586-6525016
Length = 969
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 28 ERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHN--HAKLQSLWLKATKKRKL 83
E+L + ++ + R N E++++LE H S + H KL+ + L + K+
Sbjct: 545 EQLRVFNNQIEEDRKIIISRHNLVEMHKVLEEHELSCEDLLHVKLEGIILTKQRAEKV 602
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 29.1 bits (62), Expect = 0.61
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 32 AHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLW 74
AH+S+LKAK ++ F KE R+L+ + N +L S W
Sbjct: 111 AHKSLLKAKDLLEFLPRMIKEDVRMLDVESNLEKNLVELGSSW 153
>01_06_1027 +
33912773-33912816,33913245-33913401,33913492-33913589,
33913680-33913775,33914422-33914681,33914778-33915088,
33915154-33915297,33915452-33915589,33915674-33915721,
33916328-33916408,33916705-33916864,33917411-33917532
Length = 552
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 49 NFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIAK 95
N L LL+S FS H A+ + + ++ K+QA + AK
Sbjct: 268 NVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQARYDFSFSYAK 314
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 36 VLKAKAMVAFHRGNFKELY-RLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIA 94
+L KA+ H GNF++ LLES N A + L +L + + K + + L++A
Sbjct: 213 ILNGKALCLMHMGNFEDAEGLLLESLNKDAKDAETLANLVVCSLNLGKSASRYLNQLKLA 272
>02_05_0170 - 26431937-26434282
Length = 781
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 44 AFHRGNFKELYRLLESHNFSAH 65
+++RGNFKE Y L H+ H
Sbjct: 210 SYNRGNFKEFYDCLAEHDPILH 231
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 16 RLGRFLWSLPACERLHAHESVLKAKAMVAFHRGN 49
+LG F+ LP C RL ++ +++ +MV H N
Sbjct: 41 KLGPFMQVLPICSRL-LNQEIMRVSSMVNDHGFN 73
>06_03_1271 + 28883904-28884326,28885556-28886242
Length = 369
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 33 HESVLKAK-AMVAFHRGNFKELYRLLESHNFSAHNHAK 69
HE+V+ K M+ HR +FK++Y + E + H K
Sbjct: 88 HENVIALKDIMMPVHRRSFKDVYLVYELMDTDLHQIIK 125
>02_01_0368 - 2643310-2643999,2645043-2645468,2645694-2645759
Length = 393
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 33 HESVLKAK-AMVAFHRGNFKELYRLLESHNFSAHNHAK 69
HE+V+ K M+ HR +FK++Y + E + H K
Sbjct: 111 HENVIALKDIMMPVHRRSFKDVYLVYELMDTDLHQIIK 148
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 16 RLGRFLWSLPACERLHAHESVLK-AKAMVAFHRGNFKELYRLLESHNF 62
R ++L +L +R A E ++K K +F+ FKE+ +LL NF
Sbjct: 77 RKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENF 124
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 16 RLGRFLWSLPACERLHAHESVLKAKAMVAFHRG 48
RL R L AC +HAH + L+ +A+ + H G
Sbjct: 688 RLARKATYLQAC-LMHAHFAKLRRQALASLHSG 719
>04_04_0050 -
22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 3 RPYQVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELY 54
RP QA + F PACERL A + A A+ H G+ +Y
Sbjct: 57 RPSVAAGQACRAKKGEDFALLKPACERLPAGGAPFSAFALFDGHNGSGAAVY 108
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 16 RLGRFLWSLPACERLHAHESVLK-AKAMVAFHRGNFKELYRLLESHNF 62
R ++L +L +R A E ++K K +F+ FKE+ +LL NF
Sbjct: 77 RKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENF 124
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,256
Number of Sequences: 37544
Number of extensions: 79630
Number of successful extensions: 237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 14,793,348
effective HSP length: 71
effective length of query: 28
effective length of database: 12,127,724
effective search space: 339576272
effective search space used: 339576272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)
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