GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
         (99 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)              96   4e-21
SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   1e-19
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-19
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   4e-15
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.022
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.36 
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   0.47 
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.9  
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)                     27   1.9  
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               26   5.8  

>SB_37035| Best HMM Match : Homeobox (HMM E-Value=9.6e-09)
          Length = 243

 Score = 96.3 bits (229), Expect = 4e-21
 Identities = 41/76 (53%), Positives = 60/76 (78%), Gaps = 4/76 (5%)

Query: 6  QVLQQAGNIDRLGRFLWSLPAC----ERLHAHESVLKAKAMVAFHRGNFKELYRLLESHN 61
          + L+++G+++RL RFLWSLP      E L  HESVL+A+A+VAFH GNF++LY +LE+H 
Sbjct: 20 ETLEESGDVERLARFLWSLPVAPGTLEALGKHESVLRARAIVAFHMGNFRDLYHILETHR 79

Query: 62 FSAHNHAKLQSLWLKA 77
          F+  +HAKLQ++WL+A
Sbjct: 80 FTRESHAKLQAMWLEA 95


>SB_48109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 43/73 (58%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 6   QVLQQAGNIDRLGRFLWSLPA-CERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSA 64
           + LQ +GNI+RL RFLWSLP   E +HA E++L AKA+VAFH+ NFKELY +LES  F  
Sbjct: 73  ECLQNSGNIERLARFLWSLPKDSEEIHACETILVAKAVVAFHQNNFKELYSILESRKFQR 132

Query: 65  HNHAKLQSLWLKA 77
             H KLQ LW  A
Sbjct: 133 SEHEKLQCLWRTA 145


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 39/70 (55%), Positives = 54/70 (77%)

Query: 8   LQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNH 67
           L+QAG+I+RL RFLWSLP  + L+  ESVLKA+A+V+FHRG ++E+Y +LE++ F   +H
Sbjct: 31  LRQAGDIERLSRFLWSLPPDDLLNGSESVLKARAIVSFHRGRYREVYNILETNEFDPSSH 90

Query: 68  AKLQSLWLKA 77
             LQ LW KA
Sbjct: 91  ELLQCLWYKA 100


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 35/74 (47%), Positives = 51/74 (68%)

Query: 4   PYQVLQQAGNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFS 63
           P Q+  + G+I RL +FL S+P  +  +  ES+LKA+AMVAFHRG ++E+Y +LE++ F 
Sbjct: 748 PQQLADKEGDIKRLSQFLLSIPQEDLQNKSESLLKARAMVAFHRGCYQEVYNILENNKFD 807

Query: 64  AHNHAKLQSLWLKA 77
             +H  LQ LW KA
Sbjct: 808 TSSHEFLQCLWYKA 821


>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 17 LGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLW 74
          L  FL +LP  E+    E++ +++A + F R  +  LY+LL+ + F+  +   L  LW
Sbjct: 43 LEMFLSTLPNTEKYKTEEALNRSRAYLEFQRKRYGNLYQLLKGNTFT--DAEDLVKLW 98


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 17/59 (28%), Positives = 26/59 (44%)

Query: 30   LHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFS 88
            +   E  L  K        +++E++RLLE H       AK Q  + + TK  K + N S
Sbjct: 5852 IQTKEEALAEKEKEPIPDDDYEEVHRLLEEHKVFQEEMAKKQPSYDRLTKSAKRRTNGS 5910


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 37  LKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSL 73
           ++AK ++   + N+KE Y++LE   F  HN+ K Q +
Sbjct: 339 MEAKQLLNKTKPNYKEAYKILEEAAF-VHNYTKAQEM 374


>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 34  ESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAK--LQSLWLKATKKRKLQANFSLD 90
           +S + A + + ++  +   L+ L  S  F A   A+   Q+ WL+ + K+ L+  F+LD
Sbjct: 186 DSQISASSHLQYYEPHQARLHLLASSKGFGAWCAAQNQAQNEWLQVSHKQNLKYRFNLD 244


>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
          Length = 1470

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 3/71 (4%)

Query: 23  SLPACERLHAHESVLKAKAMVAFHRGNFKELYRLLESHNFSAHNHAKLQSLWLKATKKRK 82
           S  + + LHA   +  ++ ++      F + YR L      + NH+K  ++   +T+ RK
Sbjct: 212 SKASLKELHASIGITPSEILIKMQTMTFVDTYRALLD---LSRNHSKNSTVSKNSTRARK 268

Query: 83  LQANFSLDLRI 93
           L      D+ I
Sbjct: 269 LHDQIDTDVPI 279


>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 45  FHRGNFKELYR-LLESHNFSAHNHAKLQSLW 74
           F   N KEL   LL+ HNF    H  L  +W
Sbjct: 230 FEPANDKELAEDLLDIHNFIKERHLTLGQIW 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,494
Number of Sequences: 59808
Number of extensions: 89862
Number of successful extensions: 272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 10
length of query: 99
length of database: 16,821,457
effective HSP length: 71
effective length of query: 28
effective length of database: 12,575,089
effective search space: 352102492
effective search space used: 352102492
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)