GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000156-TA|BGIBMGA000156-PA|undefined
         (99 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   2.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   8.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    19   8.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 12  GNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFHRGNFKELYRL 56
           GN+ R    LW LP  + L+   + ++     AF R    E  RL
Sbjct: 491 GNLSR--GMLWDLPNLQILNLARNKVQHVERYAFERNMRLEAIRL 533


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 76  KATKKRKLQANFSLDLRIAKTLKI 99
           KA+KK++ +++   + +  KTL I
Sbjct: 600 KASKKKREKSSAKKERKATKTLAI 623


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 51  KELYRLLESHNFSAHNHAKLQSLWLKATKKRKLQANFSLDLRIAKTLK 98
           ++L  L E      HN+   +    +  K+     NFSL  ++AK  K
Sbjct: 282 EDLQDLEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFSLSRKLAKFAK 329


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,723
Number of Sequences: 429
Number of extensions: 660
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 99
length of database: 140,377
effective HSP length: 49
effective length of query: 50
effective length of database: 119,356
effective search space:  5967800
effective search space used:  5967800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.7 bits)
S2: 38 (19.4 bits)