Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000155-TA|BGIBMGA000155-PA|IPR003521|Nucleotide-
sensitive chloride conductance regulator
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   8.0  

>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 51   PSGNPAPTINLLYPSISLHAIQREPSPALYMVLNYEL 87
            PSG PAP +  L PS SL  I R+P     ++  YE+
Sbjct: 2060 PSGIPAPRVIALSPS-SLLVIIRDPLNPNGVITRYEI 2095


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 17   LQSPSTKLLINDQELGTATLYITENNVIW 45
            L +   K ++N+ ELGT T YI E    W
Sbjct: 1441 LTTEQAKQVLNENELGTMTYYIREYTKGW 1469


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,333,237
Number of Sequences: 59808
Number of extensions: 175024
Number of successful extensions: 175
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)