GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000155-TA|BGIBMGA000155-PA|IPR003521|Nucleotide-
sensitive chloride conductance regulator
         (201 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729...    30   1.5  
11_06_0264 - 21785450-21786928                                         29   2.6  
02_02_0419 - 10009686-10012568                                         29   3.4  
12_02_0476 + 19493278-19493349,19493595-19494209,19494352-194945...    27   7.9  
11_01_0185 + 1455635-1455817,1455997-1456051,1456415-1456611,145...    27   7.9  

>07_03_1540 -
           27570605-27571375,27571474-27572748,27572769-27572921,
           27572923-27573159
          Length = 811

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 23  KLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREPSPAL 79
           KL++ D ELG+  L + E + +  G   P G+P   + +L    S+HA+  +  P +
Sbjct: 405 KLIVADNELGSLKLAL-EGSYVEPG---PGGDPIHNLKVLPTGKSIHALDPQTMPTI 457


>11_06_0264 - 21785450-21786928
          Length = 492

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 46  GGGVSPSGNPAPTINLLYPSISLHAIQREPSPALYMVL 83
           GGG + S +P+P    +  S S H     P P  Y+ +
Sbjct: 299 GGGAASSSSPSPVARTVLSSPSPHQYSSGPKPTQYLAV 336


>02_02_0419 - 10009686-10012568
          Length = 960

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 34  ATLYITENNVIWGGGVSPSGNP---APTINLLYPSISLHAIQREPSPALYMVLNYELRLP 90
           A L +++NN+I G GVSPS  P       +L Y ++S   +  E  P L  +    LR  
Sbjct: 116 AYLDLSQNNLIGGDGVSPSPLPRFLGSLCDLRYLNLSFTGLAGEIPPQLGNLT--RLRQL 173

Query: 91  ELSQQAG 97
           +LS   G
Sbjct: 174 DLSSNVG 180


>12_02_0476 +
           19493278-19493349,19493595-19494209,19494352-19494519,
           19494677-19494868,19495604-19495672,19496461-19496544
          Length = 399

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 8   FAEPADGVLLQSPSTKLLINDQELGTATLYIT 39
           +  PA+GV L +PS++LL +D+ +  A L++T
Sbjct: 100 YCMPAEGVEL-TPSSELLSHDEIIRVADLFVT 130


>11_01_0185 +
           1455635-1455817,1455997-1456051,1456415-1456611,
           1456850-1457206,1457355-1457424,1457527-1457672,
           1457786-1457831,1457910-1457962,1458507-1458651,
           1459268-1459386,1459494-1459565,1459872-1459975,
           1460117-1460173,1460260-1460452,1460535-1460678,
           1460825-1460927,1461444-1461592,1462674-1462728,
           1464037-1464227,1464580-1464701,1464831-1464978,
           1465354-1465423,1465499-1465644,1466097-1466247,
           1466614-1466732,1466807-1466848,1466849-1466961,
           1467496-1467552,1467642-1467834,1468040-1468183,
           1468567-1468665
          Length = 1280

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 12  ADGVLLQSPSTKLLINDQELGTATLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAI 71
           +D V L   +T L      LG+    +T +NV+     S     +   + L  ++S H+I
Sbjct: 605 SDPVSLTISATGLQARVNALGSTATVLTSSNVMDENSFSNPNKQSRCKSRLLLTLSPHSI 664

Query: 72  QREPSP 77
            R PSP
Sbjct: 665 LRLPSP 670


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,047,914
Number of Sequences: 37544
Number of extensions: 171553
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 5
length of query: 201
length of database: 14,793,348
effective HSP length: 79
effective length of query: 122
effective length of database: 11,827,372
effective search space: 1442939384
effective search space used: 1442939384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)