GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000155-TA|BGIBMGA000155-PA|IPR003521|Nucleotide-
sensitive chloride conductance regulator
         (201 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductan...    39   0.002
At1g14780.1 68414.m01767 expressed protein                             30   1.2  

>At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductance
           regulator (ICln) family protein contains PF03517:
           Nucleotide-sensitive chloride conductance regulator
           (ICln)
          Length = 229

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 16/111 (14%)

Query: 35  TLYITENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREP----SPALYMVLNYELRLP 90
           TLYIT   +IW   V  +   A  ++ L  SISLHA+ R+P    SP +Y  +  E    
Sbjct: 50  TLYITSRKLIWLSDVDMAKGYA--VDFL--SISLHAVSRDPEAYSSPCIYTQIEVE---- 101

Query: 91  ELSQQAGSTXXXXXXXXXXXXQPITQLRFIPENENELQAMYSAMCQGQELH 141
               +                  I ++R +P +  +L+ ++   C+  EL+
Sbjct: 102 ----EDEDDESDSESTEVLDLSKIREMRLVPSDSTQLETLFDVFCECAELN 148


>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 40  ENNVIWGGGVSPSGNPAPTINLLYPSISLHAIQREP--SPALYMVLNYELRL 89
           +N V+   GV P G P P  N +   + L  + R P  SP  ++V    L L
Sbjct: 553 KNEVVLDSGVFPGGPPVPANNKIVKFVDLSQLCRGPQHSPGHWLVTGVRLYL 604


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,834,834
Number of Sequences: 28952
Number of extensions: 128005
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 2
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)