Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000154-TA|BGIBMGA000154-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (591 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    29   0.14 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    26   0.76 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   5.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   9.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   9.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 457 LIQGLHSKDKDIILTVLQKNDPR---VARVTVSNLPPQYVFMLLEQLTEMSLKKTSQRSH 513
           L++ +H+K ++ + TVL +N P+   + R  +  +P       L     ++ K T Q+  
Sbjct: 358 LVERMHNKLRNALQTVLAQNHPQHPDILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQQ 417

Query: 514 LCQLLNLKXXXXXXXXXXXXXXXXEKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWD 573
           +      +                 +Q +Q           +       P + E  ASW 
Sbjct: 418 M--QAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWG 475

Query: 574 ESDEQLSDD 582
            + +   D+
Sbjct: 476 SASDVTLDE 484


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.2 bits (55), Expect = 0.76
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 144 KQTYNISIENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGY 203
           K    +  E   ++  +++ +KI+ +++    +  +    + S ++ + ++V L    GY
Sbjct: 113 KSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCD-KCSTYQSNGEEVCLENCTGY 171

Query: 204 STSQTAILSLVSFNDTYYIVEGSENERLLSFWDVTVTDESTQ 245
                 +L +   N  +   EGS  + L S WD   TD+S +
Sbjct: 172 Q-QYLRLLEVPQINLEWG--EGSSGDDLSSEWDSDYTDKSNE 210


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 555 EDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
           +D D D E  + E G    E++++L  D D +
Sbjct: 278 DDRDDDEENEEEEDGRGQSEAEKRLKLDEDAD 309



 Score = 24.2 bits (50), Expect = 3.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEIS 588
           D   + D D+D + E  +   G S  E   +L +D D  +S
Sbjct: 273 DGEGADDRDDDEENEEEEDGRGQSEAEKRLKLDEDADGAVS 313


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 335 KPLPLQCCRLQQDGNINLGYLNDRGLVFEKIT-PDLKTKTQVLIRGDVKEKKKTKQNDNS 393
           K  P+    + Q     L     +G     IT P++K + + +   D+K +  T  ND+ 
Sbjct: 257 KSEPIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKEVEDMEYDDIKTELSTGMNDDI 316

Query: 394 LLRTEFHSSEATYLD 408
              TE        LD
Sbjct: 317 PPETEEEEENDKKLD 331


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 542 EQTAVLDYNDSSDEDNDADMEPSQ--SESGASWDESDEQLSD 581
           E+T    Y+ S+ ED++  + P +  S + +  D S   L+D
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLAD 426


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 542 EQTAVLDYNDSSDEDNDADMEPSQ--SESGASWDESDEQLSD 581
           E+T    Y+ S+ ED++  + P +  S + +  D S   L+D
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLAD 426


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 79  CIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVY 134
           C+ +  +    L+   S    I ++ P K+   KVT  D S+K G  + T     Y
Sbjct: 741 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 796


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 151 IENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLI 198
           I+ +T +G+  +AI I P     K  Y V     +S     N D T+I
Sbjct: 157 IKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLISYAGYKNPDGTII 204


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 9.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 79  CIVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVY 134
           C+ +  +    L+   S    I ++ P K+   KVT  D S+K G  + T     Y
Sbjct: 831 CVAISLSATVTLVCLYSPKIYIILFQPDKNIRRKVTMGDKSKKQGSSAGTSSITKY 886


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.128    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,969
Number of Sequences: 429
Number of extensions: 7418
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 591
length of database: 140,377
effective HSP length: 61
effective length of query: 530
effective length of database: 114,208
effective search space: 60530240
effective search space used: 60530240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 46 (22.6 bits)