Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000154-TA|BGIBMGA000154-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 39 0.011
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 38 0.014
At3g01260.1 68416.m00032 aldose 1-epimerase family protein simil... 34 0.30
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 33 0.53
At3g28330.1 68416.m03539 F-box family protein-related contains T... 33 0.53
At4g35680.1 68417.m05065 expressed protein contains Pfam profile... 33 0.70
At5g63740.1 68418.m08000 zinc finger protein-related 32 0.93
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 32 0.93
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 32 1.2
At1g23280.1 68414.m02912 MAK16 protein-related contains similari... 32 1.2
At5g50310.1 68418.m06229 kelch repeat-containing protein similar... 31 1.6
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 1.6
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 31 1.6
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 31 1.6
At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi... 31 2.1
At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04... 31 2.8
At4g21970.1 68417.m03180 expressed protein contains Pfam profile... 31 2.8
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 31 2.8
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 30 3.8
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 30 3.8
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 30 3.8
At5g07170.1 68418.m00817 hypothetical protein 30 3.8
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 30 3.8
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 30 3.8
At4g03565.1 68417.m00490 expressed protein 30 3.8
At3g50690.1 68416.m05546 leucine-rich repeat family protein 30 3.8
At3g03773.1 68416.m00384 expressed protein 30 3.8
At2g23170.1 68415.m02768 auxin-responsive GH3 family protein sim... 30 3.8
At2g22080.1 68415.m02622 expressed protein 30 3.8
At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc ... 30 5.0
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 30 5.0
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co... 30 5.0
At4g14290.1 68417.m02202 expressed protein contains Interpro ent... 30 5.0
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 30 5.0
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 30 5.0
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 30 5.0
At2g21420.1 68415.m02549 zinc finger protein-related contains lo... 30 5.0
At1g30470.1 68414.m03724 SIT4 phosphatase-associated family prot... 30 5.0
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 29 6.6
At5g46500.1 68418.m05726 expressed protein 29 6.6
At5g16500.1 68418.m01928 protein kinase family protein contains ... 29 6.6
At3g24630.1 68416.m03093 hypothetical protein 29 6.6
At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family... 29 6.6
At2g24990.1 68415.m02988 RIO1 family protein similar to extragen... 29 6.6
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 29 6.6
At2g11910.2 68415.m01278 expressed protein 29 6.6
At2g11910.1 68415.m01277 expressed protein 29 6.6
At1g77640.1 68414.m09039 AP2 domain-containing transcription fac... 29 6.6
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 6.6
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 29 6.6
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 6.6
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 29 6.6
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 29 6.6
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 8.7
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 29 8.7
At5g60140.1 68418.m07539 transcriptional factor B3 family protei... 29 8.7
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 29 8.7
At5g14050.1 68418.m01644 transducin family protein / WD-40 repea... 29 8.7
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 29 8.7
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 29 8.7
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 29 8.7
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 29 8.7
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 29 8.7
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 29 8.7
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 29 8.7
At2g27820.1 68415.m03373 prephenate dehydratase family protein 29 8.7
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 8.7
At1g22060.1 68414.m02759 expressed protein 29 8.7
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2)
{Homo sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 38.7 bits (86), Expect = 0.011
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 545 AVLDYNDSSDEDN--DADMEP--SQSESGAS------WDESDEQLSDDGDVEISDAE 591
A +DY + DED+ DAD EP + + GAS WD SDE D ++++SD E
Sbjct: 239 ADMDYEEEEDEDDPEDADFEPYDAADDGGASKKHGQGWDVSDEDPESDEEIDLSDYE 295
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 38.3 bits (85), Expect = 0.014
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 48/246 (19%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY-----TPDL---------HLTSPPTCLQW 51
FS Y + T DGR+KIWDT ++ E+ T + HL+ TC++W
Sbjct: 13 FSPALDYLALSTGDGRIKIWDTVKGQVQTEFADIASTEETNIYTKVGKGHLSVDYTCMKW 72
Query: 52 TTVSQSVSNLKGXXXXXXXXXXXXXXQCIVLGTTNGKLLIYSISQAKIINVWVPAKHFSA 111
++ + G +VLGT G +L ++ ++ W +
Sbjct: 73 LSLEKKKKRKLG-------------TSVLVLGTGGGDVLALDVASGQL--KWRISDCHPG 117
Query: 112 KVTALDWSRKYG-LYSCTKDSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHN 170
V A+ S K +YS D V + + G++ + + S TK ++++ + P
Sbjct: 118 GVNAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKAS----TK---TVSSLCVSP-- 168
Query: 171 QHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSF-NDTYYIVEGSENE 229
+ LVTAS QL + + +K + T ++ V+F D Y++ + E
Sbjct: 169 ---DGKILVTASTQLKTFNCSD-----LKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGE 220
Query: 230 RLLSFW 235
R ++ W
Sbjct: 221 RYIAVW 226
>At3g01260.1 68416.m00032 aldose 1-epimerase family protein similar
to non-cell-autonomous protein pathway2, plasmodesmal
receptor [Nicotiana tabacum] GI:15824567; contains Pfam
profile PF01263: Aldose 1-epimerase
Length = 378
Score = 33.9 bits (74), Expect = 0.30
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
D ND D++ND D + + ++ D+ D+ +DDGD E
Sbjct: 59 DDNDHDDDNNDHDDDDNNDDNNDGDDDHDDDNNDDGDDE 97
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 33.1 bits (72), Expect = 0.53
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 1 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCL 49
+ + FSEDGK+ + + DG L+IWD V+ + +H+ P T L
Sbjct: 560 ITDLCFSEDGKWVISSSMDGSLRIWD----VILAKQIDGVHVDVPITAL 604
>At3g28330.1 68416.m03539 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 349
Score = 33.1 bits (72), Expect = 0.53
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 130 DSRVYEWNIEDGSVKQTYNISIENNTKQGSNINAIKIIPHNQHKKSRYLVTASYQLSLWR 189
+ ++ W +E + + IS+++ K G + + P + K+ YL + LS+
Sbjct: 237 EDKLCVWRLESWQWRLVFEISLDS-IKTGFDYIPLGTDPFDA--KTVYLWSRKCLLSI-N 292
Query: 190 LHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIVEGSENERLLSFW 235
LHN D+ L K + +S++ + S+ D YI+E + +L W
Sbjct: 293 LHNGDIVLHKDVEHSSAGRILNSVDCPRDMTYILESNFASFVLPQW 338
>At4g35680.1 68417.m05065 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 503
Score = 32.7 bits (71), Expect = 0.70
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 167 IPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTY 220
+P H S L TA +LS+WR + +++ S GY +T ++ LV+ + Y
Sbjct: 23 LPSRIHPLSVKLRTALSRLSIWRRSSSSISVSASFGY---ETVLVGLVNLTELY 73
>At5g63740.1 68418.m08000 zinc finger protein-related
Length = 226
Score = 32.3 bits (70), Expect = 0.93
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
D + DED DAD + + E D+ D+ DD D + +D
Sbjct: 66 DGDGDEDEDEDADADEDEDEDEDEDDDDDDDDDDDDDADDAD 107
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
E +DE D +D D+ +DAD + + DE D+ DD + E D E
Sbjct: 85 EDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDEDEDDDDDDDDENDEECDDE 138
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
E +DE D +D D+D+D + E D+ +++ DD D + +D E
Sbjct: 81 EDEDEDEDEDDDDDDDDDDDDDADDADDDEDDDDEDDDEDEDDDDDDDDENDEE 134
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
D + DED D D + + E ++ D+ DD D + DA+
Sbjct: 64 DGDGDGDEDEDEDADADEDEDEDEDEDDDDDDDDDDDDDADDAD 107
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGD 584
++ +++ A D ++ DED D D + + + D D++ DD D
Sbjct: 70 DEDEDEDADADEDEDEDEDEDDDDDDDDDDDDDADDADDDEDDDDED 116
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 32.3 bits (70), Expect = 0.93
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 237 VTVTDESTQNNNDEPTPNKRHKRKHSAVPVQPTP 270
V VTDE QN + + K KHS+VP+ +P
Sbjct: 140 VVVTDEKKQNQRKQKKLGRSKKEKHSSVPLLASP 173
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 31.9 bits (69), Expect = 1.2
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
DY+D D+D+D D + + D+ D+ DD D + D
Sbjct: 282 DYSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 323
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEI 587
D +D D+D+D D + + D+ D+ DDGD I
Sbjct: 291 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDYYI 330
Score = 29.9 bits (64), Expect = 5.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
DY+ S D+D+D D + + D+ D+ DD D + D
Sbjct: 280 DYDYSDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 321
>At1g23280.1 68414.m02912 MAK16 protein-related contains similarity
to MAK16 protein SP:P10962 from [Saccharomyces
cerevisiae]
Length = 303
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 538 EKQDEQTAVLDYNDSSDE---DNDADMEP-SQSESGASWDESDEQLSDDGDVEISDAE 591
EK++E+ V++Y + DE + + DME S S S+ E D+ SDD D + DAE
Sbjct: 201 EKEEEEEGVIEYVEGDDELEAEEEEDMEDFSGLPSKESYLEGDDHDSDDEDDD--DAE 256
>At5g50310.1 68418.m06229 kelch repeat-containing protein similar to
Kelch repeats protein 3 (SP:Q08979) [Saccharomyces
cerevisiae]; contains Pfam PF01344: Kelch motif (6
repeats)
Length = 666
Score = 31.5 bits (68), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 552 SSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
S DE+ D D + SE + +ESD++ DD +VE D +
Sbjct: 499 SDDEEGDEDDDEDDSEDEGNSEESDDE-DDDEEVEAMDVD 537
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 31.5 bits (68), Expect = 1.6
Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 16/187 (8%)
Query: 81 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 140
+ G+ + K+ ++SI ++++ W + + S R+Y + D
Sbjct: 570 ISGSLDAKVRVWSIPDRQVVD-WYDLHEMVTSACYTPDGQGVLVGSYKGSCRMY--SASD 626
Query: 141 GSVKQTYNISIENNTKQG--SNINAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVT-L 197
++Q I+++N K+ I + +P + S LVT+S R+ D T L
Sbjct: 627 NKLQQKSQINLQNKKKKAHQKKITGFQFVPGSS---SEVLVTSSDS----RIRVVDGTDL 679
Query: 198 IKSL-GYSTSQTAILSLVSFNDTYYIVEGSENERLLSF-WDVTVTDESTQNNNDEPTPNK 255
+ L G+ + + I + ++ D Y+V SE+ + + ++ + S NNN T
Sbjct: 680 VNKLKGFRNTSSQISASITA-DGKYVVSASEDSHVYIWKYESPASRPSRSNNNKNVTVTN 738
Query: 256 RHKRKHS 262
++ HS
Sbjct: 739 SYEHFHS 745
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 31.5 bits (68), Expect = 1.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVL 32
FS DG Y +T+ +DG L+I+D T L
Sbjct: 311 FSNDGAYLATVGRDGYLRIFDFSTQKL 337
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 31.5 bits (68), Expect = 1.6
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
E +DE+ A + + + + +D E S+SE S DE + DVE+ DAE
Sbjct: 226 ESEDEKPAQKKADTKASKKSSSD-ESSESEEDESEDEEETPKKKSSDVEMVDAE 278
>At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam
profiles: PF04841 Vps16, N-terminal region, PF04840:
Vps16, C-terminal region; identical to cDNA VCL1 (VCL1)
GI:13877132
Length = 858
Score = 31.1 bits (67), Expect = 2.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 7 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 51
S +GK+ + T DGR+ + D ET + +Y+ + L PP + W
Sbjct: 249 SPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESAL--PPQQMAW 291
>At5g37430.1 68418.m04503 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 607
Score = 30.7 bits (66), Expect = 2.8
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 548 DYNDSSDEDNDADME-PSQSESGASWDESDEQLSDDGDVEISD 589
D +D D+D+D D + + G D+ D+ DDGD + D
Sbjct: 561 DDDDGDDDDDDGDDDGDDDDDDGDDGDDDDDDDGDDGDDDDDD 603
>At4g21970.1 68417.m03180 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584; expression
supported by MPSS
Length = 181
Score = 30.7 bits (66), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 106 AKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 140
AK SA + DWS+ YG S ++ W I+D
Sbjct: 56 AKQSSAPMNIPDWSKVYGYSKKNTSSHLHSWAIDD 90
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 30.7 bits (66), Expect = 2.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 4 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTP 38
A+F+ DG T + D +K+WD++T Q + P
Sbjct: 353 AIFTSDGSRIITASSDCTVKVWDSKTTDCLQTFKP 387
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 4 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQE 35
A FS DG++ ++ + DG +++WD + LK++
Sbjct: 219 ARFSPDGQFLASSSVDGFIEVWDYISGKLKKD 250
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 30.3 bits (65), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 539 KQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
K E+ D D SD++++++ E SE G DE D SDD + E S+ E
Sbjct: 63 KPAEEKPESDEEDESDDEDESE-EDDDSEKGMDVDEDD---SDDDEEEDSEDE 111
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 30.3 bits (65), Expect = 3.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 539 KQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
K E+ D D SD++++++ E SE G DE D SDD + E S+ E
Sbjct: 146 KPAEEKPESDEEDESDDEDESE-EDDDSEKGMDVDEDD---SDDDEEEDSEDE 194
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 3 EAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQW 51
EA F+ DGKY + + DG L W+ E + ++ + S CL+W
Sbjct: 249 EATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNIGVVS---CLKW 294
>At5g07170.1 68418.m00817 hypothetical protein
Length = 542
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
+D+ D D+D D + + D+ D+ DD D E D+E
Sbjct: 108 DDADDTDDDEDDDDDDDDDDDDDDDDDDDDDDDDDDESKDSE 149
>At4g10710.1 68417.m01751 transcriptional regulator-related similar to
chromatin-specific transcription elongation factor FACT
140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 30.3 bits (65), Expect = 3.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSD 581
E +DE + +S D++ + + S+ E G +WDE + + ++
Sbjct: 981 ESEDEASESESLVESDDDEEEDSEQESEEEKGKTWDELEREATN 1024
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 30.3 bits (65), Expect = 3.8
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 540 QDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
QDE V D D D+ A+ E + DE D+ DGD + D
Sbjct: 632 QDEAVLVSDSESGDDFDDGANQEDEGDKDPQRGDEGDDTHQGDGDPKQGD 681
>At4g03565.1 68417.m00490 expressed protein
Length = 263
Score = 30.3 bits (65), Expect = 3.8
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 541 DEQTAVLDYNDSSDEDNDADMEPSQSESGASWD-ESDEQLSDDGDVEISDAE 591
D T DY SSD + + + S E G +D ES+E+ DD D SD E
Sbjct: 25 DSDTREDDY--SSDGEKEGEDYESNGEEGDEYDGESNEEEDDDDDDNESDRE 74
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 547 LDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
+D ++ D+D D D E + + G ++ E +D DVE D E
Sbjct: 330 IDGHEQGDDDEDGDGETGEDDQGV--EDDGEFADEDDDVEEEDEE 372
>At3g03773.1 68416.m00384 expressed protein
Length = 150
Score = 30.3 bits (65), Expect = 3.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 547 LDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
+D+N DED + + E + + A ++ E DDG + + D E
Sbjct: 101 VDWNKWCDEDEEVNSETASDDESAFVNQDSESSDDDGLLYLPDLE 145
>At2g23170.1 68415.m02768 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 595
Score = 30.3 bits (65), Expect = 3.8
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 313 LNGSSTKPIKPSLTIQTTTADAKPLPLQCCRLQQDGNINLGYLNDRGLVFEKITPDLKTK 372
++ STK +K I+ T + + + R N + YL GL KTK
Sbjct: 12 MHSPSTKDVKALRFIEEMTRNVDFVQKKVIREILSRNSDTEYLKRFGLKGFTDRKTFKTK 71
Query: 373 TQVLIRGDVK-EKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPRK 416
V+I D+K E ++ D S++ + + +E T+ RK
Sbjct: 72 VPVVIYDDLKPEIQRIANGDRSMILSSYPITEFLTSSGTSAGERK 116
>At2g22080.1 68415.m02622 expressed protein
Length = 177
Score = 30.3 bits (65), Expect = 3.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 541 DEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
D++ D ND D+DN + + + E D+ E+ DD D E+ + E
Sbjct: 109 DDEPEGDDGNDDEDDDNHENDDEDEEEDEDENDDGGEE-DDDEDAEVEEEE 158
>At5g23570.1 68418.m02765 XS domain-containing protein / XS zinc
finger domain-containing protein-related contains Pfam
profiles PF03468: XS domain, weak hit to PF03470: XS
zinc finger domain
Length = 625
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 542 EQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEIS 588
+ TAV ++ D D+ ++A E +++S A D D+ SDD D ++S
Sbjct: 147 QHTAVQEFPDVEDDVDNASEE--ENDSDALDDSDDDLASDDYDSDVS 191
>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 965
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 128 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIPHNQ 171
TKD + +IEDGS V +T + NNT G N A ++P Q
Sbjct: 634 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQ 677
>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
contains weak similarity to Peroxisomal membrane protein
2 (22 kDa peroxisomal membrane protein)
(Swiss-Prot:P42925) [Mus musculus]
Length = 1087
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 128 TKDSRVYEWNIEDGS--VKQTYNISIENNTKQGSNINAIKIIPHNQ 171
TKD + +IEDGS V +T + NNT G N A ++P Q
Sbjct: 607 TKDIKAL--HIEDGSSRVSRTALAPLPNNTSHGRNTPACAVVPETQ 650
>At4g14290.1 68417.m02202 expressed protein contains Interpro entry
IPR000379
Length = 534
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 407 LDNTAVAPRKRTAPGANPSI--EVPMEARLQNLALDVNSKSNVAVNENLTKLLIQGLHSK 464
L + + +K APG+ EV ++ + + N SN + +E K ++ S
Sbjct: 335 LSSPPSSAQKSLAPGSTSDAINEVRLKRPMSRTEVPSNDPSNQSSSETKEKESLEVSSSS 394
Query: 465 DKDIILTVLQKNDPRVARVTVSNLPPQYVFMLLEQLTE 502
D+I L DP + V+ QYV +++L +
Sbjct: 395 SSDMISFDLSNGDPYPPHLAVALDDDQYVEFHVDELAD 432
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 29.9 bits (64), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 1 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVL 32
+++ FS D ++ + + D LK+WD ET L
Sbjct: 74 ISDVAFSSDARFIVSASDDKTLKLWDVETGSL 105
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 177 YLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDTYYIVEGSENERLLSFWD 236
+L TASY + + +D +L+KSL S+ A L + + D+ I S ++R + W
Sbjct: 480 FLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITA--DSSCIATVS-HDRTIKLWT 536
Query: 237 VTVTDESTQ 245
+ D+ +
Sbjct: 537 SSGNDDEDE 545
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 29.9 bits (64), Expect = 5.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDE--QLSDDGDVEISDAE 591
EK+DE+ ++ + + S+E + D ++ SG D +E +S G+ SD E
Sbjct: 218 EKEDEENSMEENGNESEESGNEDHSMEENGSGVGEDNENEDGSVSGSGEEVESDEE 273
>At2g21420.1 68415.m02549 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 468
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
+D D+D+D D + + D+ DE DDG ++ D
Sbjct: 391 DDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDDGYIDSDD 430
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQL-SDDGDVEISD 589
D +D D+D+D D + + DE D + SDD DV+ D
Sbjct: 395 DDDDDDDDDDDDDDDDDDDDDDDEDDEDDGYIDSDDDDVDGDD 437
>At1g30470.1 68414.m03724 SIT4 phosphatase-associated family protein
contains similarity to copper chaperone homolog CCH
GB:AAF15286 GI:6525011 from [Glycine max]; contains Pfam
profile PF04499: SIT4 phosphatase-associated protein
Length = 811
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 551 DSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
+ +D+D+D D + + G DE+ E+L D+ VE
Sbjct: 699 EDNDDDDDTDNKSAVKTPGVPGDETTEKLPDESGVE 734
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 541 DEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
D++ ++ NDS ED + + E + E +E +E+ D+ +E
Sbjct: 125 DDEDKEIESNDSEGEDEEEEEEDEEEEEEEEEEEEEEKDGDNEGIE 170
>At5g46500.1 68418.m05726 expressed protein
Length = 417
Score = 29.5 bits (63), Expect = 6.6
Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 8/231 (3%)
Query: 339 LQCCRLQQDGNINLGYLNDRGLVFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSLLRTE 398
L CC +GN +L +G ++ + ++ T+ L G + K+ LL +
Sbjct: 184 LDCCIPLNEGNASLA----QGNYYDHVDINIHI-TESL--GSFGSTSELKEWGIRLLEED 236
Query: 399 FHSSEATYLDNTAVAPRKRTAPGANPSIEVPMEARLQNLALDVNSKSNVAVNENLTKLLI 458
S+E + + P A N P++ + + + S N E TK
Sbjct: 237 SSSAENQLGNPNSTLPHVSEAEEGNMGYYTPVQGLVNEIEHNGESGDNNVETERSTKHAA 296
Query: 459 QGLHSKDKDIILTVLQKNDP-RVARVTVSNLPPQYVFMLLEQLTEMSLKKTSQRSHLCQL 517
Q + DI + + +D + + + + M+++ L M +K +L
Sbjct: 297 QRNYYDHVDIDIEQMDSDDDIEEWGRHLEDCHQRRIDMVIQTLCSMFVKPMKTMMDAIRL 356
Query: 518 LNLKXXXXXXXXXXXXXXXXEKQDEQTAVLDYNDSSDEDNDADMEPSQSES 568
+ K ++ E + + + +D S+E D+D + +E+
Sbjct: 357 ITTKSEETVMNSDIGRETDHFEECEDSDISNESDQSEERGDSDDDGINNET 407
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDG 583
++Q+++ D +D SD +++ D E QS+ + ES SD G
Sbjct: 427 KRQEQEETATDSDDESDSNSEKDQEEEQSQLEKA-RESSSSSSDSG 471
>At3g24630.1 68416.m03093 hypothetical protein
Length = 724
Score = 29.5 bits (63), Expect = 6.6
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 379 GDVKEKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPRKRTA-----PGANPSIEVPMEAR 433
G +K++ K++ + R E H S+ AVAPRK ++ P + + V +
Sbjct: 27 GAIKKQSKSRSSSTKQ-RCEEHLSKVKERSEMAVAPRKSSSTEDVPPSSLQLLRVSKGIQ 85
Query: 434 LQNLALDVNSK--SNVAVN--ENLTKLLIQG-LHSKDKDIILTVLQKNDPR 479
N+A++ SK S AV+ E++ K L++G L ++ +L+ +Q++D +
Sbjct: 86 KLNVAIESLSKGFSFEAVSRPEDIAKDLLRGALDLEESLAMLSSIQEDDSK 136
>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
protein contains Pfam profile PF04000: Sas10/Utp3
family; contains Prosite PS00761: Signal peptidases I
signature 3; weak similarity to PEBP2 beta-binding
protein / charged amino acid rich leucine zipper
factor-1 (GI:12061569) [Mus musculus]
Length = 654
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 547 LDYNDSSDEDNDADMEPSQSESGASWD-ESDEQLSDDGDVE 586
LD ND +DE ++ D++P G + E DE D+ + E
Sbjct: 42 LDVNDDTDESDEDDVQPVFDLQGVDDESEEDEDTEDEEEAE 82
>At2g24990.1 68415.m02988 RIO1 family protein similar to extragenic
suppressor of the bimD6 mutation (SUDD) [Emericella
nidulans] GI:2338556, RIO1 [Saccharomyces cerevisiae]
GI:1359602; contains Pfam profile PF01163: RIO1 family
Length = 537
Score = 29.5 bits (63), Expect = 6.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 547 LDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDD 582
++ ND E+ + E +SE G+ +ES+E+L +
Sbjct: 459 IEVNDEEKEEEGEEEEDGESEEGSEEEESEEELGHE 494
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 29.5 bits (63), Expect = 6.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 547 LDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
++ +D ED+D +++ E DE DE+ D+ D E +A+
Sbjct: 299 VEADDLDIEDDDDEIDEDDDEEDEEDDEDDEEEDDEDDDEEEEAD 343
>At2g11910.2 68415.m01278 expressed protein
Length = 168
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 551 DSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
D +E+ D + +P + G S DE D+ D D E D E
Sbjct: 105 DEGEEEADPEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNE 145
>At2g11910.1 68415.m01277 expressed protein
Length = 168
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 551 DSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
D +E+ D + +P + G S DE D+ D D E D E
Sbjct: 105 DEGEEEADPEDDPVTNGGGGSDDEDDDDEEGDNDDEDEDNE 145
>At1g77640.1 68414.m09039 AP2 domain-containing transcription
factor, putative Similar to DREB1A (GP:3660548)
[Arabidopsis thaliana]
Length = 244
Score = 29.5 bits (63), Expect = 6.6
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 541 DEQTAVLDYNDSSDEDNDADMEPSQSESGASW-DESDEQLSDDGDV 585
D T D ND D D+ D PS S S AS + D DDGD+
Sbjct: 135 DHFTPPSDENDH-DHDDGLDHHPSASSSAASSPPDDDHHNDDDGDL 179
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 6 FSEDGKYYSTITKDGRLKIW 25
FS DGKY +T +DG +KIW
Sbjct: 206 FSPDGKYLATGGEDGVVKIW 225
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVL 32
F DGK ++ T DG++ WDT VL
Sbjct: 527 FRPDGKQLASSTLDGQINFWDTIEGVL 553
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVL 32
F DGK ++ T DG++ WDT VL
Sbjct: 567 FRPDGKQLASSTLDGQINFWDTIEGVL 593
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 29.5 bits (63), Expect = 6.6
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASW------DESDEQLSD-DGDVEIS 588
+K D+ +A L D+D D P + +S SW +E D SD +GD +IS
Sbjct: 354 QKNDKNSASLSQTSKDVVDDDDDDWPEEEDSANSWAPMFTVNEDDVSFSDLEGDDDIS 411
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 29.5 bits (63), Expect = 6.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTET 29
FS DG + T D +K WDTET
Sbjct: 334 FSNDGSKFLTAGYDKNIKYWDTET 357
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 4 AMFSEDGKYYSTITKDGRLKIWDTETNVLKQEY------TPDLHLTS 44
A F+ DG Y T KD +++W+ +L + Y D+H+TS
Sbjct: 24 ARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTS 70
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 539 KQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
+ DE ++ D S+ED++ D E DE + + +DG+ E
Sbjct: 42 EDDEVDSMEDDEGESEEDDEGDTEEDDEGDSEEDDEGENKEDEDGESE 89
>At5g60140.1 68418.m07539 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 328
Score = 29.1 bits (62), Expect = 8.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 542 EQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
+ VL+ +DS D DND +E E D+ L D+ DVE D
Sbjct: 140 DDVIVLNSDDSDDSDNDYSVEDDNVA------EDDDGLEDEVDVEAED 181
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 29.1 bits (62), Expect = 8.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 538 EKQDEQTAVL-DYNDSSDEDNDADMEPSQSESGASWDESDEQL 579
EK+DE+ + D D +E ND D E + ES ++ E +
Sbjct: 252 EKEDEKEESMDDKEDEKEESNDDDKEDEKEESNDDKEDKKEDI 294
>At5g14050.1 68418.m01644 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to unknown protein (ref|NP_057085.1)
Length = 546
Score = 29.1 bits (62), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTET 29
FSEDGK+ + DG++ +WD T
Sbjct: 382 FSEDGKHLLSSGGDGQVYVWDLRT 405
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 554 DEDNDADMEPSQSESGASWDESDEQLSDDGDVEIS 588
D+D+D+D E S+ ES D S+E+ + + DVEI+
Sbjct: 411 DDDDDSDDESSE-ESSDDDDSSEEEENGEVDVEIT 444
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
E ++E A+L+ D D+D+D D E +SDE L D ++E
Sbjct: 958 EDEEEWVAILEDEDEDDDDDDDDDEDDDD------SDSDESLGDWANLE 1000
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 41
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 516 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 549
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 41
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 41
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 41
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLH 41
FS DGK ++ D ++ IW+ ET L+ E TP+ H
Sbjct: 518 FSYDGKLLASAGHDKKVFIWNMET--LQVESTPEEH 551
>At2g27820.1 68415.m03373 prephenate dehydratase family protein
Length = 424
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 109 FSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSV-KQTYNISIENNTKQGSNINAIKII 167
FS ++ DW + S +S+ ++ S +Y++S N G+ ++ + ++
Sbjct: 33 FSINSSSSDWQSSCAILSSKVNSQEQSESLSSNSNGSSSYHVSAVNGHNNGAGVSDLNLV 92
Query: 168 PHNQHK 173
P N ++
Sbjct: 93 PFNNNQ 98
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.1 bits (62), Expect = 8.7
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 538 EKQDEQTAVLDYND--SSDEDNDADMEPSQSESGASWDESDEQLSDDGDVE 586
E+QD+ AV++ + SS D D ++E S + G DE DE + + VE
Sbjct: 161 ERQDDGLAVIEEEEERSSASDEDVNVEKSVEDEGDE-DERDEDVIVEKPVE 210
>At1g22060.1 68414.m02759 expressed protein
Length = 1999
Score = 29.1 bits (62), Expect = 8.7
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 435 QNLALDVNSKSNVAVNENLTKLLIQGLHSKDKDIILTVLQKNDPRVARV 483
+ L +++ S+VAV TKLL++ L + K +++++ K+ + V
Sbjct: 1064 EGLGQEISELSSVAVEHGRTKLLVEELAEEKKRVLVSLQDKSQETLGLV 1112
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,263
Number of Sequences: 28952
Number of extensions: 571272
Number of successful extensions: 2488
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 2245
Number of HSP's gapped (non-prelim): 244
length of query: 591
length of database: 12,070,560
effective HSP length: 85
effective length of query: 506
effective length of database: 9,609,640
effective search space: 4862477840
effective search space used: 4862477840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -