Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000154-TA|BGIBMGA000154-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
(591 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 34 0.048
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.064
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.15
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 32 0.26
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 31 0.34
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 31 0.45
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.45
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 31 0.59
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 30 0.78
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.78
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 30 1.0
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 30 1.0
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 30 1.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 1.4
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 1.4
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 29 1.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 1.8
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 1.8
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 1.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 1.8
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 29 2.4
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 29 2.4
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 28 3.2
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 28 3.2
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 28 3.2
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 28 4.2
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 4.2
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 28 4.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 5.5
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 7.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 7.3
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 7.3
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 7.3
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 7.3
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 7.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 7.3
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 7.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 7.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 9.7
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 9.7
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 9.7
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 9.7
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 9.7
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 9.7
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 27 9.7
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 9.7
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 9.7
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 9.7
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 34.3 bits (75), Expect = 0.048
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 541 DEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
DE + ++SS EDND+ S SES +S ++SD S S +E
Sbjct: 110 DESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE 160
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
++SS EDND+ S SES +S ++SD S S +E
Sbjct: 173 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSE 214
Score = 31.9 bits (69), Expect = 0.26
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESD-EQLSDDGDVEISDAE 591
++SS EDND+ S SES +S ++SD S D + E S +
Sbjct: 227 SESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKD 269
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 538 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
E D ++ D ++SS ED+D+ S SES +S + SD S S +E
Sbjct: 124 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 178
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 538 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
E D ++ D ++SS ED+D+ S SES +S + SD S S +E
Sbjct: 178 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSE 232
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 538 EKQDEQTAVLDY-NDSSDEDNDADMEPSQSESGASWDESDEQLS-----DDGDVEISDAE 591
E D ++ D ++SS ED+D+ S SES +S +SD + DD + SD+E
Sbjct: 232 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE 291
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
++SSD ++D+ + S SES +S ++SD S S +E
Sbjct: 274 SNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSE 315
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
+ SSD ++++ E S S S +S ES E S+D D S ++
Sbjct: 148 SSSSDSESESSSEGSDSSSSSSSSES-ESSSEDNDSSSSSSD 188
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 550 NDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
+ SSD ++++ E S S S +S ES E S+D D S ++
Sbjct: 202 SSSSDSESESSSEGSDSSSSSSSSES-ESSSEDNDSSSSSSD 242
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.064
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 37
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.15
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 80 IVLGTTNGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNI 138
++ G NG +++YS + V KH + AL S K L S + D VY W++
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDL 261
Query: 139 EDGSVKQTYN 148
G TYN
Sbjct: 262 NTGDAISTYN 271
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 31.9 bits (69), Expect = 0.26
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 6 FSEDGKYYSTITK--DG-RLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVSQSVSNLK 62
F+E K Y+ + + D RL+I+D+ LK EY L +C+ W S
Sbjct: 24 FNETAKLYANVVEALDAQRLRIFDSVAGSLKTEYI--LEKEKVISCIAWEQKPLYASE-- 79
Query: 63 GXXXXXXXXXXXXXXQCIVLGTTNGKLLIYS 93
+ +VLGT +G++LIYS
Sbjct: 80 -----QITTDISGSGEILVLGTNSGEILIYS 105
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 31.5 bits (68), Expect = 0.34
Identities = 40/213 (18%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 241 DESTQNNNDEPTPNKRHKRKHSAVPVQPTPMYSFVLEDAPRAIDSVLREGDGVQLNIVAA 300
DE+ N+ P+ R K + P+ T D+ + + D V + +
Sbjct: 123 DENHSTNSKPPSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVNTHALEE 182
Query: 301 TRSGVVHYYQHTLNGSSTKPIKPSLTIQTTTADAKPLPLQCCRLQQDGNINLGYLNDRGL 360
T V + + S+KP KPS T+ +T + K + + + ++ +++ G
Sbjct: 183 TNGDVTRAIEKIVQHGSSKPQKPS-TLTSTKSTIKLVSARLKKRNKNLSVHFEDGTKPGD 241
Query: 361 VFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPRKRTAP 420
+E +T D + + L + E+ N + ++ + + V P + P
Sbjct: 242 AYE-VTGDTRAASPTL---NPFEQMMAMTNQGMSVSPGVETTSSPFF-TAPVEPNQPLQP 296
Query: 421 GANPSIEVPMEARLQNLALDVNSKSNVAVNENL 453
PS+ P+ + + + A +N S ++ NL
Sbjct: 297 -LRPSMTGPVPSSMGSEA-TLNMPSTYGIDSNL 327
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 31.1 bits (67), Expect = 0.45
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEY 36
F DGK+ +T ++DG +K+WD +++ Y
Sbjct: 91 FHCDGKWLATSSEDGTVKVWDMRAPSVQRNY 121
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 31.1 bits (67), Expect = 0.45
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 83 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGS 142
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 143 VKQTY 147
VK++Y
Sbjct: 140 VKRSY 144
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 30.7 bits (66), Expect = 0.59
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 540 QDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDAE 591
Q+E + L+ N DE +A + S E+ S DE DE D D + SD E
Sbjct: 561 QEEAVSDLEDNSDIDESANAGKDFSDDENIGS-DEEDESEYDPMDTDTSDGE 611
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 426 IEVPMEARLQNLALDVNSKSNVAVNENLTKLLIQGLHSKDKDIILTVLQKNDPRVARVTV 485
I +P+ LQ+ N + + L +L + S +K + T +QK+ PR ++
Sbjct: 29 IHIPILIFLQSRGTSPNDA--IPIKSPLERLA-NSVTSPEKPTVRTAIQKDSPRRKQIDD 85
Query: 486 SNLPPQYVFMLLEQLTEMSLKK 507
PP+++ + +T +S +K
Sbjct: 86 DQTPPKHLKRSFQNVTVVSPRK 107
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.78
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 6 FSEDGKYYSTITKDGRLKIWD 26
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 541 DEQTAVLDYN-DSSDEDNDADMEPSQSESGASWDESDEQ 578
+E+ +Y+ D+S+ED ++ E ESG WDE + +
Sbjct: 960 EEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 540 QDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSD--DGDVEISDAE 591
+ +QT + D DE+ D +ME + SE ES+ +++ D + E SD E
Sbjct: 450 ETQQTLLTSALDDEDEEGDEEMEEALSEDEDFQAESESDVAEEYDENAESSDEE 503
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 7 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTP 38
+ DG+Y T D LK+WD T L YTP
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTP 306
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 549 YNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEIS 588
++D +D+D+D E S S + DESDE SD+G +S
Sbjct: 604 HSDLNDDDDDYQDEESYSYASDDDDESDED-SDEGPTLLS 642
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETN 30
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 1.4
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 104 VPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGSVKQTYNISI---ENNTKQGSN 160
V AK F + L+ SR+ S + S ++ ED +++ +++ E +T+Q N
Sbjct: 126 VQAKDFHSARKKLE-SRRQAYESLLQKS--FKEKKEDSRLEEDIRLALYKFEESTEQVKN 182
Query: 161 -INAIKIIPHNQHKKSRYLVTASYQLSLWRLHNKDVTLIKSLGYSTSQTAILSLVSFNDT 219
+ A+K + +Q+++ L+ Y+L+ + K+ T I + ++ SQ ++ +
Sbjct: 183 RMIALKDVEADQYQQLTELIV--YELNFF----KESTGILNTIFN-SQNSLTPQKKIQSS 235
Query: 220 YYIVEGSENERLLSFWDVTVTDESTQNNNDE---PTPNKRHKRKHSAVPVQPTPMYSFVL 276
VE NE L S D +++ T+ N E PTP KRK V +YSF
Sbjct: 236 ERSVE---NEFLASPMDPSLSKLFTKTTNTEKISPTPFSTPKRKSKKETVFVKAIYSFTG 292
Query: 277 EDAPRAIDSVLREGDGVQLN 296
+ + +D L GD +Q++
Sbjct: 293 RN-EKELD--LHTGDVIQVS 309
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 555 EDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
EDN EP ESG +DE +E+ +D D + D
Sbjct: 495 EDNSNFHEPELYESGLEYDEDEEEDEEDVDEDELD 529
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTE 28
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQ 578
E+++E ++ S D+ ++ S+SES +S ES+E+
Sbjct: 147 EEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEE 187
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 538 EKQDEQTAVLDYND----SSDEDNDADMEPSQSESGASWDESDEQL 579
E ++E+ AV+ + SSD +++ S+SES +S E +E++
Sbjct: 145 ESEEEEEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEV 190
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDG 583
E DE T+ + ND S ED+D D ++ A + SDE +G
Sbjct: 342 EGVDEGTST-EANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEG 386
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 4 AMFSEDGKYYSTITKDGRLKIWDT--ETNVLKQEYTPDLHLTSPPTCLQWTTVSQSV 58
A FS G Y ++ G ++IWD E +LK + T ++ T L W SQ +
Sbjct: 64 ARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTA---ISGRITDLDWDGDSQRI 117
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 7 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHL-TSPPTCLQW 51
+E G + ++ DG LKI DT T + ++ D + SP + +QW
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQW 113
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 229 ERLLSFWDVTVTDESTQNNNDEPTPNKRHKRKHSAVPVQPTPMYSFVLE 277
ER + W+V + + S + +PNK K+KH A P +L+
Sbjct: 176 ERRFTEWNVPLRETSPSPSETADSPNKLPKQKHPAYSFVTLPKREEILK 224
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 541 DEQTAVLDYNDSSDEDNDAD-MEPSQSESGASWDESDEQLSDDGDVE 586
D+ V D +E+ +AD ME E G +E +E+ DGD E
Sbjct: 165 DDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGE 211
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISD 589
D++D+ DAD E + E+ +E DE+ D + E D
Sbjct: 163 DFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 538 EKQDEQTAVLDYNDSSDEDNDADMEPSQSESGASWDESD-----EQLSDDGDVEIS 588
E +E + D + SD + ++ MEP +E +DE D E + DD D EI+
Sbjct: 94 ENDEESSQQEDSSSKSDSEEESSMEPKTTE----YDEDDKHVTVEIVEDDDDEEIA 145
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 335 KPLPLQCCRLQQDGNINLGYLNDRGLVFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSL 394
+P P++ + G+ + N F+K+ ++ QV+I V +K+T + L
Sbjct: 487 RPCPIEQHFIGAKGSPKIVNSNIDEACFDKVLKLIQEGHQVMIF--VHSRKETINSAKKL 544
Query: 395 LRTEFHSSEATYLDNT 410
FH EA LDN+
Sbjct: 545 REQFFHEGEADLLDNS 560
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPDL--HLTSPPT 47
FS+ G++ T + DG ++ WD T +++ TP + LT PT
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPT 624
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 4.2
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 80 IVLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIE 139
+++G NG +L+ S KI++ + K V +D Y L + + D V W+
Sbjct: 212 LIVGRDNGTVLVLDTSDGKILHEFTAHKKRVKSVYPVD---DY-LITASSDGSVCIWD-- 265
Query: 140 DGSVKQTYNISIENNTKQGSNINAI 164
+ +N+ IE+N +G+ I +
Sbjct: 266 -----KDWNLVIEHNIPEGNRITCM 285
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 443 SKSNVAVNENLTKLLIQGLHSKDKDIILTVLQKNDPRVARV 483
S+ N N N+ KL ++ LH + T K DP +++V
Sbjct: 403 SRENFEFNVNIAKLQVETLHKLIDSAMQTEKVKKDPSLSQV 443
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 551 DSSDEDNDADMEPSQSESGASWDESDEQ 578
++SDED D+E + E +E DE+
Sbjct: 204 EASDEDESVDLEEDEEEEDEEDEEGDEE 231
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 548 DYNDSSDED-NDADMEPSQSESGASWDESDEQLSDD 582
D ND +D+D N+ + + +S SG+ E DE + ++
Sbjct: 218 DTNDGTDDDINNNEYKDDESSSGSESYERDEDVDEE 253
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 221 YIVEGSENERLLSFWDVTVTDESTQNNNDEPTP---NKRHKRKHSAVPVQPTPMY 272
++ ENE LL ++ +++E + ++EP+ KR +RK+ + T MY
Sbjct: 682 FLYSDQENEDLLESFERVISEELSLLKSNEPSDISLKKRKRRKNCEKRILGTMMY 736
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 548 DYNDSSDEDNDADMEPSQSESG--ASWDESDEQLSD-DGDVEI 587
D SS+ D +++ E ++ E+ + WDE +E +S+ +GD +
Sbjct: 142 DLPQSSEVDRNSETEGTREENSNTSDWDEQNEYVSEVEGDYNL 184
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 4 AMFSEDGKYYSTITKDGRLKIWDTET 29
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 113 VTALDWSRKYGLYSCTKDSRVYEWN 137
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 379 GDVKEKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPR-KRTAPGANPSIEVPMEARLQNL 437
G + KK K+ + + + +EAT ++ + P K + EA + +
Sbjct: 1112 GKMPASKKNKRQKGDVKKIDETKNEATDMEESLTTPSGKVNKEVIVDDTSLRDEAIVPDK 1171
Query: 438 ALDVNSKSNVAVNENLT 454
A+DV SN + EN++
Sbjct: 1172 AIDVADNSNALLKENIS 1188
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MAEAMFSEDGKYYSTITKDGRLKIWD 26
++ +S DG+ T DG++K+WD
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWD 367
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 210 ILSLVSFNDTYYIVEGSENERLLSFWDVTVTDESTQNNNDEPTPNKRHKR 259
+ SL+SF Y IVE + R L FW + D S +P+ ++ K+
Sbjct: 358 LASLLSFPG-YAIVEEKVSWRTLEFWTTLIEDFSMSKAATDPSKDEIFKQ 406
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 548 DYNDSSDEDNDADMEPSQSESGASWDESDEQLSDDG 583
D+ D +E+N D E Q + + E DE++++DG
Sbjct: 4130 DFEDPLEENNTLD-EDIQQDDFSDLAEDDEKMNEDG 4164
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 6 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPDLHLTSPPTCLQWTTVS 55
+S DG + + +G ++IW+ +T + +Y H +C+ W+ ++
Sbjct: 209 YSSDGGFLAIARVNGFVEIWNRKTKNNRCDY--KFHHDGDISCMAWSPIN 256
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 552 SSDEDNDADMEPSQSESGASWDESDEQLSDDGDVEISDA 590
SS+ D + + + + S DE DE +D DVE+S++
Sbjct: 221 SSESDRVSQISDDEEDEEGSADEEDE---EDSDVELSES 256
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 203 YSTSQTAILSLVSFNDTYYIVEGSENERLLSFW 235
Y+TS T++++ DT +V+G E+ + W
Sbjct: 405 YTTSNTSVVNAFEPYDTIDLVDGGEDRENIPLW 437
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 356 NDRGLVFEKITPDLKTKTQVLIRGDVKEKKKTKQNDNSLLRTEFHSSEATY 406
NDR L F + +++ D+ T+ +DN+ TE S E +Y
Sbjct: 36 NDRNLPFHREREKVESNPNSSDEEDLTSTNNTRSSDNTTSDTEDDSGEDSY 86
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 367 PDLKTKTQVLIRG-DVKEKKKTKQNDNSLLRTEFHSSEATYLDNTAVAPRKRTAPGANPS 425
P K + V +G + EK L + + ++ + L NT VAP + A+P
Sbjct: 580 PSAKASSPVTSKGVSINEKSAVNNYATPLSKPQPKDTKGSKLGNTFVAPSPAASLPASPP 639
Query: 426 IEVPMEAR 433
+ ++ R
Sbjct: 640 VGTELKTR 647
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 462 HSKDKDIILTVLQKNDPRVARVTVSNLP 489
H+ DK L V Q+NDP + +LP
Sbjct: 448 HTSDKRFNLYVTQRNDPNTKSQLIESLP 475
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 6 FSEDGKYYSTITKDGRLKIWD 26
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 203 YSTSQTAILSLVSFNDTYYIVEGSENERLLSFW 235
Y+TS T++++ DT +V+G E+ + W
Sbjct: 405 YTTSNTSVVNAFEPYDTIDLVDGGEDRENIPLW 437
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 26.6 bits (56), Expect = 9.7
Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 393 SLLRTEFHSSEATYLDNTAVAPRKRTAPGANPSIEVPMEARLQNLALDVNSKSNVAVNEN 452
S+ + + +T ++T+ A +NP EA + L V ++ NVAV EN
Sbjct: 95 SVPEKKVEAPSSTVAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAV-EN 153
Query: 453 LTKLLIQGLHSKDKDIILTVLQKNDPRVARVTVSNLP 489
+ ++ G + + + N R ++ +P
Sbjct: 154 MVEM---GYERSEVERAMRAAFNNPDRAVEYLLTGIP 187
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,233
Number of Sequences: 5004
Number of extensions: 117113
Number of successful extensions: 548
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 456
Number of HSP's gapped (non-prelim): 104
length of query: 591
length of database: 2,362,478
effective HSP length: 77
effective length of query: 514
effective length of database: 1,977,170
effective search space: 1016265380
effective search space used: 1016265380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)
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