Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000153-TA|BGIBMGA000153-PA|undefined
         (310 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    32   0.006
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   6.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 103 IPPV--LPKPQRDEGPAVEKLISITPTTP----KPPENALTKAIDAT 143
           +PP   +P P+R   P + + +S++PTTP     PPE  LT + DA+
Sbjct: 71  LPPKREIPSPKRSS-PILAEKVSVSPTTPPTPSPPPEERLTPSKDAS 116


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 211 LNTMNILPPYINVVTPNKLSESKTIQIDPKKAVIDDSLTTKTKLKQSNSAAS 262
           L + NILPP       +K +E          +V D S    T + +SN+ +S
Sbjct: 674 LMSNNILPPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKDGTTVPESNNGSS 725


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 138 KAIDATVIDKTNHKNALVPDRKTAPIASP 166
           K +D+ V  K   +  +VP+    PI  P
Sbjct: 152 KYVDSKVFAKAREEATVVPEGSRTPIEIP 180


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,349
Number of Sequences: 317
Number of extensions: 2849
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 114,650
effective HSP length: 57
effective length of query: 253
effective length of database: 96,581
effective search space: 24434993
effective search space used: 24434993
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 43 (21.4 bits)