GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000153-TA|BGIBMGA000153-PA|undefined
         (310 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 17  KEEEEDLQYLP---LLRASQEYGNIPISAE 43
           KE   DL  +    +LRA++EY  +PI AE
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAE 460


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 17  KEEEEDLQYLP---LLRASQEYGNIPISAE 43
           KE   DL  +    +LRA++EY  +PI AE
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAE 460


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 17  KEEEEDLQYLP---LLRASQEYGNIPISAE 43
           KE   DL  +    +LRA++EY  +PI AE
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAE 460


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 11  QTATRNKEEEEDLQYLPLLRASQEYGNIPISAEPSVRHVDVVVSAETRNTNKFLPSNSTD 70
           QT    +    D+  + L R   + G+     + S    D+ +   +RN    L  NS  
Sbjct: 174 QTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCRADIRILDLSRNEITRLQENSPL 233

Query: 71  RLLSSVEEAHIDDESLSEV 89
             L  ++E H+   ++ E+
Sbjct: 234 LDLRQLQELHLQRNAIVEI 252


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.125    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,282
Number of Sequences: 429
Number of extensions: 3634
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 310
length of database: 140,377
effective HSP length: 58
effective length of query: 252
effective length of database: 115,495
effective search space: 29104740
effective search space used: 29104740
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 44 (21.8 bits)