Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000153-TA|BGIBMGA000153-PA|undefined
(310 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 31 0.98
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 31 0.98
At1g28330.3 68414.m03480 dormancy-associated protein, putative (... 31 1.3
At1g28330.2 68414.m03479 dormancy-associated protein, putative (... 31 1.3
At1g28330.1 68414.m03478 dormancy-associated protein, putative (... 31 1.3
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 2.3
At3g62610.1 68416.m07033 myb family transcription factor similar... 29 3.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 3.0
At2g35050.1 68415.m04300 protein kinase family protein contains ... 29 4.0
At5g19950.3 68418.m02375 expressed protein 29 5.2
At5g19950.2 68418.m02374 expressed protein 29 5.2
At5g19950.1 68418.m02373 expressed protein 29 5.2
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 6.9
At5g40450.1 68418.m04905 expressed protein 28 9.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 9.2
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 28 9.2
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 9.2
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 31.1 bits (67), Expect = 0.98
Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 19/219 (8%)
Query: 6 VHSRPQTATRNKEE-----EEDLQYLPLLRASQEYGNI-----PISAEPSVRHVDVVVSA 55
+ S P+ + K E +ED+ + P R+S+E +I P EPS V V
Sbjct: 213 ISSPPKAHSSKKNESTHMNDEDVSFPPRTRSSKETSDILTTTQPAIVEPSEPKVRRVSRR 272
Query: 56 ETRNTNKFLPSNSTDRLLSSVEE--AHIDDESLSEVDEKPVVWETS--FTVIPPVLPKPQ 111
+ ++ + + S E H++DE++S E + + S T P + +
Sbjct: 273 KQLYAKRYKARETQPAIAESSEPKVLHVNDENVSSPPEAHSLEKASDILTTTQPAIAESS 332
Query: 112 RDEGPAV-EKLISITPTTPKPPENALTKAIDATVIDKTNHKNALVPDRKTAPIASPDPPR 170
+ P V ++ +S TP +N T+ +D +KT+ I + P
Sbjct: 333 EPKVPHVNDENVSSTPRAHSSKKNKSTR----KNVDNVPSPPKTRSSKKTSDILTTTQPT 388
Query: 171 INAWSQDXXXXXXXXXXXXXDAAKLEQNLNALKKNSGSV 209
I S+ A + + +KN ++
Sbjct: 389 IAESSEPKVRHVNDDNVSSTPRAHSSKKNKSTRKNDDNI 427
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 31.1 bits (67), Expect = 0.98
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 90 DEKPV-----VWETSFTVIPPVLPKPQRDEGPAV-------EKLISITPTTPKPPENALT 137
DEKP VW +S + PP L KP P K I P P PP N+
Sbjct: 15 DEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIVSAPYKPPPPSNSSQ 74
Query: 138 KAIDATVIDKTNHKNALVPDRKTAPIASPDPPRINAWSQ 176
+ +H+ ALV ++ I DP R N + +
Sbjct: 75 SVLIPANESAPSHQPALV-GVTSSVIEEYDPARPNDYEE 112
>At1g28330.3 68414.m03480 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 LSSVEEAHIDDESLSEVDEKPVVWETSFTVIPPVLP-KPQRDEGPAVEKLISITPTTPKP 131
L + I+ + E VV S T+ V P P P + ++ + P
Sbjct: 24 LRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPRKDNVWRSVFNP 83
Query: 132 PENALTKAIDATVIDKTNHKNA 153
N T+AI + + DK H N+
Sbjct: 84 GSNLATRAIGSNIFDKPTHPNS 105
>At1g28330.2 68414.m03479 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 LSSVEEAHIDDESLSEVDEKPVVWETSFTVIPPVLP-KPQRDEGPAVEKLISITPTTPKP 131
L + I+ + E VV S T+ V P P P + ++ + P
Sbjct: 24 LRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPRKDNVWRSVFNP 83
Query: 132 PENALTKAIDATVIDKTNHKNA 153
N T+AI + + DK H N+
Sbjct: 84 GSNLATRAIGSNIFDKPTHPNS 105
>At1g28330.1 68414.m03478 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 122
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 73 LSSVEEAHIDDESLSEVDEKPVVWETSFTVIPPVLP-KPQRDEGPAVEKLISITPTTPKP 131
L + I+ + E VV S T+ V P P P + ++ + P
Sbjct: 24 LRKITTQPINIRDIGEGSSSKVVMHRSLTMPAAVSPGTPTTPTTPTTPRKDNVWRSVFNP 83
Query: 132 PENALTKAIDATVIDKTNHKNA 153
N T+AI + + DK H N+
Sbjct: 84 GSNLATRAIGSNIFDKPTHPNS 105
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/77 (28%), Positives = 26/77 (33%)
Query: 93 PVVWETSFTVIPPVLPKPQRDEGPAVEKLISITPTTPKPPENALTKAIDATVIDKTNHKN 152
P+ T V PP P P P V P P PP T + K++
Sbjct: 697 PMQHSTVTKVPPPPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNGISAMKSSPPA 756
Query: 153 ALVPDRKTAPIASPDPP 169
P R ASP PP
Sbjct: 757 PPAPPRLPTHSASPPPP 773
>At3g62610.1 68416.m07033 myb family transcription factor similar to
myb-like transcription factor GI:168590 from [Zea mays]
Length = 343
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 23 LQYLPLLRASQEYGNIPISAEPSVRHVDVVVSAETRNTNKFLPSNSTDRLLSSVEEAHID 82
L+++ LR+ + GNI E + + + LP TD + + +H+
Sbjct: 55 LRWINYLRSDIKRGNITPEEEDVIVKLHSTLGTRWSTIASNLPGR-TDNEIKNYWNSHLS 113
Query: 83 DESLSEVDEKPVVWETSFTVIPPVLPKPQRDEGPAVEKLISITPTTPKPPEN 134
L KP V T PP +P R A++ + P K P +
Sbjct: 114 -RKLHGYFRKPTVANTVENAPPPPKRRPGRTSRSAMKPKFILNPKNHKTPNS 164
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.5 bits (63), Expect = 3.0
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 98 TSFTVIPPVLPKPQRD---EGPAVEKLISITPTTPKPPENALTKAIDATVIDKTNHKNAL 154
T+ V PP P P E P +S P PP T+A T I +
Sbjct: 88 TTIPVSPPPEPSPPPPLPTEAPPPANPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNP 147
Query: 155 VPDRKTAP-IASPDPP 169
P ++ P + +PDPP
Sbjct: 148 PPPPESPPSLPAPDPP 163
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 65 PSNSTDRLLSSVEEAHIDDESLSEVDEKPVVWETSFTVIPPVLPKPQRDEGPAVEKLISI 124
P ++ + LS+ E + S V+E PV S ++P LPK +E P V + S
Sbjct: 482 PISTVESNLSAKEPKMRRESSTPRVNEYPVSSMPSDLIVPDDLPK---EEAPIVTQTSSS 538
Query: 125 T--PTTPKPPENALTKAID 141
T P++ E +L K+ D
Sbjct: 539 TPDPSSSTLSEKSLRKSED 557
>At5g19950.3 68418.m02375 expressed protein
Length = 441
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 37 NIPISAEPSVRHV------DVVVSAETRNTNKFLPSNSTDR-LLSSVEEAHIDDESLSEV 89
N+PI+AE SV+H V R TNK + N D SVE + + S S+
Sbjct: 231 NVPIAAESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDT 290
Query: 90 DEKPVV 95
K VV
Sbjct: 291 RPKQVV 296
>At5g19950.2 68418.m02374 expressed protein
Length = 443
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 37 NIPISAEPSVRHV------DVVVSAETRNTNKFLPSNSTDR-LLSSVEEAHIDDESLSEV 89
N+PI+AE SV+H V R TNK + N D SVE + + S S+
Sbjct: 231 NVPIAAESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDT 290
Query: 90 DEKPVV 95
K VV
Sbjct: 291 RPKQVV 296
>At5g19950.1 68418.m02373 expressed protein
Length = 443
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 37 NIPISAEPSVRHV------DVVVSAETRNTNKFLPSNSTDR-LLSSVEEAHIDDESLSEV 89
N+PI+AE SV+H V R TNK + N D SVE + + S S+
Sbjct: 231 NVPIAAESSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKISVEVENQEKRSSSDT 290
Query: 90 DEKPVV 95
K VV
Sbjct: 291 RPKQVV 296
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 104 PPVLPKPQRDEG--PAVEKLISITPTTPKPPENALTKAIDATVIDKTNHKNALVPDRKTA 161
PPV P P P+ +S P TP P + T + T + P T
Sbjct: 113 PPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTD 172
Query: 162 PIASPDPP 169
P+ SP PP
Sbjct: 173 PMPSPPPP 180
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 41 SAEPSVRHVDVVVSAETRNTNKFLPSNSTDRLLSSVEEAHIDDESLSEVDEKPVVWETSF 100
+AE + ++ V + E+ ++ F S D + +V E +D+++ EV + E
Sbjct: 1050 AAEKIQKSLETVQTVESPSSLLF-SSEEQDHV--TVAEEIVDEKAKEEVPMLQIKNEDDA 1106
Query: 101 TVIPPVLPKPQRDEGPAVEKLISITPTTPK 130
T I + RD GP++ ++ SI P+
Sbjct: 1107 TKIHETRVEQARDIGPSLTEICSINQNQPE 1136
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 9.2
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 10/144 (6%)
Query: 35 YGNIPISAEPSVRHVDVVVSAETRNTNKFLPSNSTDRLLSSVEEAHIDD----ESLSEVD 90
Y P P + V + A + N PS+S +S+ +A D E+ S+ +
Sbjct: 809 YSPPPPVFSPPPKPVTPLPPATSPMANAPTPSSSESGEISTPVQAPTPDSEDIEAPSDSN 868
Query: 91 EKPVVWETSFTVIP---PVLPKPQRDEGPAVE--KLISITPTTPKPPENALTKAIDATVI 145
PV +++S P P + P P VE K TP++ P N
Sbjct: 869 HSPV-FKSSPAPSPDSEPEVEAPVPSSEPEVEAPKQSEATPSSSPPSSNPSPDVTAPPSE 927
Query: 146 DKTNHKNALVPDRKTAPIASPDPP 169
D + N ++P ASP PP
Sbjct: 928 DNDDGDNFILPPNIGHQYASPPPP 951
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 27.9 bits (59), Expect = 9.2
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 46 VRHVDVVVSAETRNTNKFLPSNSTDRLLSSVEEAHIDDESLSEVDEKPVVWETSFTVIPP 105
V+ V+ ET +T K + + +L E H D E VD E + P
Sbjct: 111 VKETVAEVNVETVDTEKAEEKQTVENVLI---EDHKDQEETKIVDVSESTDEAEVQQVEP 167
Query: 106 VLPKPQRDEGPAVEKLISITPTTPKPPENALTKAIDAT 143
V +P +D A EK + + + TK +D +
Sbjct: 168 VDVQPVKDAEKAEEKPTVESVVEEETKDREETKIVDVS 205
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 105 PVLPKPQRDEGPAVEKLISITPTTPKPPENALTKAIDATVIDKTNHKNALVPDRKTAPIA 164
PV+PKP P K P+PP++ K ++ +K+ L P +K +P
Sbjct: 411 PVMPKPSDSSKPETPKTPEQPSPKPQPPKHESPKP------EEPENKHEL-PKQKESPKP 463
Query: 165 SPDPP 169
P P
Sbjct: 464 QPSKP 468
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.307 0.125 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,116,053
Number of Sequences: 28952
Number of extensions: 292662
Number of successful extensions: 842
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 26
length of query: 310
length of database: 12,070,560
effective HSP length: 81
effective length of query: 229
effective length of database: 9,725,448
effective search space: 2227127592
effective search space used: 2227127592
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 59 (27.9 bits)
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