Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000151-TA|BGIBMGA000151-PA|undefined
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.71 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.71
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 62  TEERRQSRRKNKDNLNKILQMNRRHDDML 90
           TE+ ++ R  NK +++K LQ + + DD++
Sbjct: 243 TEDTQERRLSNKGSISK-LQFHNKDDDLI 270


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 153 CTWQWNSTVSRHGL-----GFSVITPDDLVNVNST 182
           CTW+ N+T S H        ++ I PD L  +  T
Sbjct: 12  CTWELNATNSPHTCRTKNGDYTKIMPDILTAIGQT 46


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 134  SQASGVFCNFETSNASMDLCTWQWNSTVSRH 164
            +Q   V  + E+     ++ TW ++  V++H
Sbjct: 1656 TQQRNVISDSESGRLDTEMSTWGYHHNVNKH 1686


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 62  TEERRQSRRKNKDNLNKILQMNRRHDD 88
           + ERR SR +N++   K  Q  + H++
Sbjct: 232 SRERRCSRDRNREYRKKDRQYEKLHNE 258


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 42  SASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMN 83
           S+S      S H+  +   NT+      RK K  +N +L  +
Sbjct: 108 SSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQS 149


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 94  EGIPINQRTAPDNDTTLTDKIK 115
           +GIP+   T P +  T + K++
Sbjct: 208 DGIPVTLTTVPKHSKTKSPKLR 229


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,692
Number of Sequences: 429
Number of extensions: 2692
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)