Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000151-TA|BGIBMGA000151-PA|undefined
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 32 0.31
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 30 1.6
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 29 2.2
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288... 29 2.2
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615... 29 3.8
12_02_0534 - 20103908-20105897,20106314-20107116 28 5.0
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 5.0
07_03_0182 - 14815467-14815488,14815604-14815943,14816860-148172... 28 5.0
07_03_1696 - 28779455-28779733,28779813-28780074,28780805-287809... 28 6.6
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 28 6.6
08_02_1297 + 25963817-25964047 27 8.7
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 85 RHDDMLNDNEGIPINQRTAPDNDTTLTDKI 114
R DD+L+D IP++QR+ +N +L+D +
Sbjct: 379 RSDDILSDERKIPVDQRSPVENSDSLSDPV 408
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 38 QKLRSASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIP 97
Q R +S +S + ++ S+++ D +N+ LQ ++ DD ++ +
Sbjct: 1117 QGKRKSSKYKSNDDLLNEENKLQKMNKKSSSKKQKNDKINRQLQEDQTEDDHMDHLVDVA 1176
Query: 98 INQRTAPDNDTTLT-DKI 114
+ DN+ +T DKI
Sbjct: 1177 VADEVTLDNEDKITEDKI 1194
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 56 TALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDN 93
TAL E+ +Q+ K D + I+Q++ HD++L+ N
Sbjct: 99 TALKKRFEKLKQASYKEYDEMIDIMQVSGSHDEVLHKN 136
>03_01_0371 +
2883418-2883967,2884097-2884176,2886283-2886339,
2887152-2887207,2888006-2888079,2889511-2889798,
2890043-2890120,2890359-2890882,2891315-2891438,
2891619-2891767,2891983-2892137,2892477-2892682,
2892768-2892901,2892983-2893284,2893514-2893617,
2893858-2893928
Length = 983
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 85 RHDDMLNDNEGIPINQRTAPDNDTTLTDKIKILRPL-VPMYEPESKYNHV 133
+H D+L+D I I + PDN L+D ++ L+PL P PE+ ++V
Sbjct: 353 KHTDVLDDEGWITIPNKELPDNWNDLSDMLQ-LQPLDRPFLFPENGDSNV 401
>02_03_0212 -
16460665-16460766,16460971-16461298,16461379-16461502,
16461576-16461825,16462185-16462265,16463030-16463114,
16463200-16463321,16463865-16464672,16464775-16465027,
16465998-16466796
Length = 983
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 146 SNASMDLCTWQWNSTVSRHG---LGFSVITPDDLVNVNSTTKGMRFSGPSEDADRNPKGM 202
S A D CT + +S G F +++ D TK FS P +D R+P G
Sbjct: 347 SLALWDSCTKELLKVISVDGQVDTRFDILSSQDPFGYE--TKQNLFSAPRKDKARSPVGF 404
Query: 203 FELHRLRLSGS 213
F+ R L G+
Sbjct: 405 FQRSRNALMGA 415
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 51 SFHKLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDD-MLNDNEGIPINQRTAPDNDTT 109
SF K+T L N + Q KD ++++ +++ R D +++DN P T D D+
Sbjct: 95 SFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARP----TVVDVDSR 150
Query: 110 LTDKIKILRPLVPMYEPESK 129
L + L+ + +P+++
Sbjct: 151 LEAMYRKATELIGISKPKNE 170
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 63 EERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTTLTDKIKI 116
+++RQS R+ + KI MNR + + + P T D D T+ DK+ I
Sbjct: 794 KKQRQSEREEAEASKKIAWMNRDEPEGSSLSRS-PQTVDTTRDGDVTMFDKVDI 846
>07_03_0182 -
14815467-14815488,14815604-14815943,14816860-14817220,
14817232-14817666,14818042-14818149
Length = 421
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 54 KLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLND-NEGIPINQRTAPDNDTTLTD 112
++ + + +++ +S+ NKD ++M +HD L EGIP R APDN+
Sbjct: 34 RVIGMASTMKKKVESKHNNKD-----MKMALKHDIPLEVLQEGIPTVLRGAPDNEVQAGR 88
Query: 113 KIKI 116
I++
Sbjct: 89 VIRV 92
>07_03_1696 -
28779455-28779733,28779813-28780074,28780805-28780956,
28781765-28781961,28782258-28782462,28782737-28782982,
28783603-28783719,28784206-28784397,28784480-28784693,
28784835-28784926,28784952-28785001,28785494-28785812,
28785908-28786068,28786407-28786650,28787212-28787467,
28787634-28787834,28788568-28788910,28789003-28789064,
28789645-28789851,28790170-28790978
Length = 1535
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 166 LGFSVITPDDLVNVNSTTKGMRFSGPSEDADRNPKGMFELHRLR 209
LG + P D V + GM FSG + D G+ L RLR
Sbjct: 119 LGQWPVVPSDCVILEYAIAGMVFSGCFDGPDEGVSGLAHLVRLR 162
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 89 MLNDNEGIPINQRTAPDNDTTLTDKIKILRPLVPMYEPESKYNHV 133
M N+ G + PDND+T+ I+I+ ++P Y P+ K+ +
Sbjct: 191 MANELSGKFCTPVSQPDNDSTV---IQIISTIMPRYYPQLKFERL 232
>08_02_1297 + 25963817-25964047
Length = 76
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 54 KLTALMNNTEERRQSRRKNKDNLNKILQMNR 84
++ +++ E+R + R+KN D L++I+Q+ R
Sbjct: 44 QVAEMVSREEDRERERKKNLDKLDQIVQILR 74
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.129 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,330,165
Number of Sequences: 37544
Number of extensions: 213403
Number of successful extensions: 571
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 564
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 14,793,348
effective HSP length: 79
effective length of query: 135
effective length of database: 11,827,372
effective search space: 1596695220
effective search space used: 1596695220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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