GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000151-TA|BGIBMGA000151-PA|undefined
         (214 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.005
SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)                   32   0.41 
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  30   1.3  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   2.9  
SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)                 29   3.8  
SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)                     28   5.1  
SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)                       28   5.1  
SB_10377| Best HMM Match : Vicilin_N (HMM E-Value=8.9)                 28   6.7  
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)                    28   6.7  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                28   6.7  
SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)                  27   8.9  
SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  

>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 60   NNTEERRQSRRKNKDNLNKILQMNRRHDDMLND-NEGIP--INQRTAPDNDTTLTDKIKI 116
            N  EE R+  RK  + + KIL  N +  D+LN+ N GI   +N+ T  D+D  +  K++ 
Sbjct: 1945 NEIEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNV--KLQK 2002

Query: 117  LR 118
            LR
Sbjct: 2003 LR 2004


>SB_55198| Best HMM Match : NUDE_C (HMM E-Value=0.84)
          Length = 649

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 144 ETSNASMDLCTWQWNSTVSRHGLGFSVITPDDLVNVNSTTKGMRFS-GPSEDADRNPKG 201
           E S     + + + NS+VS     +  +  DD   VNS  K   F+  PSE+  RN +G
Sbjct: 405 EVSGEQNSILSPRKNSSVSNERTNYQELAADDKDTVNSPAKNGSFTLSPSENGQRNLQG 463


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 12/53 (22%), Positives = 30/53 (56%)

Query: 63  EERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTTLTDKIK 115
           EE  +++   KD  +++L ++ ++ +++ DNEG+    R   +   + T ++K
Sbjct: 363 EELNKAKASLKDKQDQLLALDTKYKELIADNEGLKDQMRGLRETANSATQELK 415


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 37  DQKLRSASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLN-KILQMNRRHDDMLNDNEG 95
           ++KL++     ++     L +++N+  ER+    K   +LN +I++M    DD+ N  + 
Sbjct: 621 NKKLKAQKNDENEEQTQLLQSILNDANERKDQLEKENRSLNQRIMEMESEVDDLRNQQKA 680

Query: 96  IPINQRTAPD 105
              +Q +  D
Sbjct: 681 HASDQDSELD 690


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 54  KLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDT 108
           ++TAL N TEE    ++  K+ L+K+ +    H D L + +   +  + A D  T
Sbjct: 495 RVTALENQTEEDAVEKKSLKNQLDKVNKRVTEHQDELMNLDQSLVEHKIAVDAHT 549


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 60  NNTEERRQSRRKNKDNLNKILQMNRRHD-DMLNDNEGIPINQRTAPDNDTT 109
           NNT + + S  KN  + N     N+  D +  +DN     N  T+ +N+T+
Sbjct: 97  NNTSDNKNSDNKNISDNNNTSDNNKTSDNNKTSDNNNTSDNNNTSDNNNTS 147



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 61  NTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTT 109
           N++    S  KN DN N     N   ++  +DN     N  T+ +N+T+
Sbjct: 93  NSDNNNTSDNKNSDNKNISDNNNTSDNNKTSDNNKTSDNNNTSDNNNTS 141



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 41  RSASPARSQGSFHKLTALMNNTEERRQ-SRRKNKDNLNKILQMNRRHDDMLNDNEGIPIN 99
           ++ +   S+   H  T  +N+  ++   S  KN DN       N   D+  +DN+ I  N
Sbjct: 61  KNCTIGNSKMDHHNQTITINDRSDKNNTSDNKNSDN-------NNTSDNKNSDNKNISDN 113

Query: 100 QRTAPDNDTTLTDK 113
             T+ +N T+  +K
Sbjct: 114 NNTSDNNKTSDNNK 127



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 60  NNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTTLTDKI 114
           NN  +   S   N  + N I+  N   ++  +DN     N   + +N+T+  + I
Sbjct: 202 NNNSDNNNSDNNNISDNNNIIDNNNSDNNNTSDNNNTSDNNNISDNNNTSDNNNI 256


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)

Query: 58   LMNNTEERRQSRR----KNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTTLTDK 113
            L+ NT +  Q+ +    K+K+ LN  L++     +ML + E IP+N+     N TT+T K
Sbjct: 1200 LIKNTPQTEQALKGLNVKDKE-LNDELEV---FSNMLGELEQIPLNKNNVTPNSTTITQK 1255

Query: 114  IKI 116
              +
Sbjct: 1256 TSL 1258


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 103  APDNDTTLTDKIKILRPLVPMYEPESKYNHVSQA----------SGVFCNFETSNASMDL 152
            +P+ND    DKI   +  VP  + +   N  S A            V C  +    S D 
Sbjct: 950  SPENDACQPDKITCSKDNVPCSKDDITCNKDSIACSRERVACLNDNVMCLKDNVMCSKDA 1009

Query: 153  CTWQWNSTVSRHGLGFSVITPDDLVNVNSTTKGMRFSGPSEDADRN 198
             T Q  S        +SV+ PD  V  N T+   + +G ++ +D N
Sbjct: 1010 VTCQNRSVTCPK---YSVLCPDSNVEPNETSVNDKCNGANDSSDDN 1052


>SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)
          Length = 212

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 42  SASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDML 90
           S+SP+ S  S  K T     T+E+R  R+++K   NK L    R D +L
Sbjct: 151 SSSPSSSSDS-PKGTLDPKETQEKRVKRKRSKAAANKRLAEGEREDKLL 198


>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
          Length = 358

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 66  RQSRRKNKDNLNKILQMNR---RHDDMLNDNEGIPINQRT 102
           R+ ++KNK+   +++Q  R   + +    D EG P++ RT
Sbjct: 25  RRKKKKNKNKAKQLVQTARNTEKEEQKSGDEEGTPVDDRT 64


>SB_14968| Best HMM Match : IL3 (HMM E-Value=8.6)
          Length = 321

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 72  NKDNLNKILQMNRRH-DDMLNDNEGIPINQRTAPDN 106
           NKDN+NK +++   H DD+ + N   PI +    DN
Sbjct: 177 NKDNINKKIRLRLSHLDDVRSANNKAPIIKDFTVDN 212


>SB_10377| Best HMM Match : Vicilin_N (HMM E-Value=8.9)
          Length = 181

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 37 DQKLRSASPARSQGSFHKLTALMNNTEERR--QSRRKNKDNLNKILQMNRRH 86
          D+KLR  S      SF K     ++  ERR  + R+   D+ +K LQ +R H
Sbjct: 3  DEKLRLTSAVVVSKSFLKEQERRDHARERRINRFRQSESDDEDKSLQRDREH 54


>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
          Length = 947

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 44  SPARSQGSFHKLTALMNNTEERRQSRRKNKDN-----LNKILQMNRRHDDMLNDNEGIPI 98
           +P ++      +  ++  TE  ++   K KDN     +NK++++    D  +N+ EG PI
Sbjct: 754 TPIKNNHQSDDIIKVVGVTESHKKKENKKKDNDGADAVNKVIKVIESDDGHVNEEEG-PI 812

Query: 99  NQRTAPDND 107
              +   N+
Sbjct: 813 TNHSDDVNE 821


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 46  ARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGIPINQR 101
           A S G F +L  +M NTE+   SRR ++    +I+   +        N G P N R
Sbjct: 353 AISTGKFVRLQEIMVNTEQ-NLSRRSSRSEHMRIMSKLQEKPSESRTNGGPPYNAR 407


>SB_28998| Best HMM Match : eIF_4EBP (HMM E-Value=4.5)
          Length = 561

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 40  LRSASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNR 84
           ++SASP  S  S     A   N E   Q +  + DN NK +   R
Sbjct: 75  IKSASPTISANSRTATVASFKNVETELQQKDASSDNDNKSISSRR 119


>SB_5969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 40 LRSASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNR 84
          ++S SPA S  S     A   N E   Q +  + DN NK +   R
Sbjct: 30 IKSVSPAISANSRTATVASFKNVETELQQKDASSDNDNKSISSRR 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,485,355
Number of Sequences: 59808
Number of extensions: 280364
Number of successful extensions: 1038
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 33
length of query: 214
length of database: 16,821,457
effective HSP length: 79
effective length of query: 135
effective length of database: 12,096,625
effective search space: 1633044375
effective search space used: 1633044375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)