GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000151-TA|BGIBMGA000151-PA|undefined
         (214 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56200.1 68416.m06246 amino acid transporter family protein l...    29   1.8  
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ...    29   2.4  
At1g06050.1 68414.m00634 expressed protein                             28   4.2  
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom...    27   9.6  
At5g42520.1 68418.m05176 expressed protein                             27   9.6  
At4g00450.1 68417.m00062 expressed protein                             27   9.6  
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi...    27   9.6  

>At3g56200.1 68416.m06246 amino acid transporter family protein low
           similarity to N system amino acids transporter NAT-1
           [Mus musculus] GI:7406950; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 435

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 120 LVPMYEPESKYNHVSQASGVFCNFETS 146
           L+P  EP S  NH S  SG+  N  TS
Sbjct: 9   LLPKQEPSSSENHGSSTSGIVFNVSTS 35


>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
           (RRS1) family protein contains Pfam profile PF04939:
           Ribosome biogenesis regulatory protein (RRS1); similar
           to Ribosome biogenesis regulatory protein homolog
           (Swiss-Prot:Q15050) [Homo sapiens]
          Length = 318

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 37  DQKLRSASPARSQGSFHKLTALMNNTEERRQSRRKNKDNLNKILQMNRRHDDMLNDNEGI 96
           D+KL    P + QG  HK   +++   +    + +  + L+KI   ++   ++LN  + I
Sbjct: 228 DKKLPGEKPPKKQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKI--FSKHSHEILNVGKAI 285

Query: 97  PINQRTAPDNDTTLTDKIK 115
            +         +  +DK+K
Sbjct: 286 NMYNVKKEKKKSGRSDKLK 304


>At1g06050.1 68414.m00634 expressed protein
          Length = 313

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 136 ASGVFCNFETSNASMDLCTWQWNSTVSRHGLGFSVITPDDLVNVNSTTKG 185
           A+ +  +  TSN   D  T + +S     G GFS +   D  N+N+T+ G
Sbjct: 253 ATSIELSSSTSNDQWDQTTSERSSWWKSIGNGFSNLLNQDTANMNNTSHG 302


>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 447

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 71  KNKDNLNKILQMNRRHDDMLNDNEGIPINQRTAPDNDTTLTDKIKILRPLVPMYEPESKY 130
           +++  ++K +++N +   +LN +E +   + T P   TT       L P+ P+   + K 
Sbjct: 239 RDEKAVSKAIELNEQLQRILNRHEDLLSGRITVPSRSTTSNGYHSNLEPVRPISNGDQKR 298

Query: 131 N-HVSQASGVFCNFETSNASMDL 152
               S A+    +F ++ A + L
Sbjct: 299 ELKASNANTESSSFISNRAHLKL 321


>At5g42520.1 68418.m05176 expressed protein
          Length = 342

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 40  LRSASPARSQGSFHKLT----ALMNNTEERRQSRRKNKDNLNKILQMNRRHD 87
           L SA P R +    K T    A     + +R+ +++++D+LNKI+ +   HD
Sbjct: 161 LESAKPKRGKRVNPKATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTHD 212


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 108  TTLTDKIKILRPLVPMYEPESKYNHVSQASGVFCNFETSNASMDLCTWQWNSTVSRHGLG 167
            TT    ++++ P +     ES+   V++    F N E   +S+        ST S   +G
Sbjct: 1769 TTERAFVQLVLPCIDQSSDESRSTFVNELVRQFSNIEQQLSSVTN-----RSTTSNKQMG 1823

Query: 168  FSVITPDDLVNVNSTTKGMRFSGPS 192
             +    +   N  ST KG+R   PS
Sbjct: 1824 TASSGSEISSNKGSTRKGLRGGSPS 1848


>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
           to receptor kinase GI:498278 from [Petunia
           integrifolia]; contains protein kinase domain,
           Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 652

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 82  MNRRHDDMLNDNEGIPINQRTAPDNDTTLTDKIKILRPLVPMYEPESKYNHVSQASGVFC 141
           +NR ++    DN  +  +Q     NDTT        +P +P+ +  S+   +   SG  C
Sbjct: 201 LNRFNESSFTDNIALCGDQIQNSCNDTTGITSTPSAKPAIPVAKTRSRTKLIGIISGSIC 260


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,426,220
Number of Sequences: 28952
Number of extensions: 183865
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 12,070,560
effective HSP length: 78
effective length of query: 136
effective length of database: 9,812,304
effective search space: 1334473344
effective search space used: 1334473344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)