Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000150-TA|BGIBMGA000150-PA|IPR006689|ARF/SAR
superfamily, IPR005225|Small GTP-binding protein domain,
IPR006687|GTP-binding protein SAR1, IPR006688|ADP-ribosylation factor
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 56  VHKDTPVTIYDLGGG 70
           VH DTPVT+  L GG
Sbjct: 831 VHGDTPVTVTWLKGG 845


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)

Query: 56  VHKDTPVTIYDLGGG 70
           VH DTPVT+  L GG
Sbjct: 827 VHGDTPVTVTWLKGG 841


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 200 QTDIHADLERRKRMLNKASNTNSQMSNSDDIATQTGFENPNYD 242
           +T      +R++R  +K     S +SN+   +    + N NY+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYN 103


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 200 QTDIHADLERRKRMLNKASNTNSQMSNSDDIATQTGFENPNYD 242
           +T      +R++R  +K     S +SN+   +    + N NY+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYN 103


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 200 QTDIHADLERRKRMLNKASNTNSQMSNSDDIATQTGFENPNYD 242
           +T      +R++R  +K     S +SN+   +    + N NY+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYN 103


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 200 QTDIHADLERRKRMLNKASNTNSQMSNSDDIATQTGFENPNYD 242
           +T      +R++R  +K     S +SN+   +    + N NY+
Sbjct: 61  ETSRERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNNNYN 103


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 219  NTNSQMSNSDD---IATQTGFENPNYDLTKSINNTEIIIVKPINHN 261
            +T +  +N  D   + TQ+     N   TK +NN   I   PIN +
Sbjct: 991  STQTSANNDKDTNAVVTQSKEARDNITATKQLNNKARIGNGPINQS 1036


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,764
Number of Sequences: 429
Number of extensions: 6153
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 7
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)