GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000150-TA|BGIBMGA000150-PA|IPR006689|ARF/SAR
superfamily, IPR005225|Small GTP-binding protein domain,
IPR006687|GTP-binding protein SAR1, IPR006688|ADP-ribosylation factor
         (429 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.1  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   7.3  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   7.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 308 EPKSAFRKLSPIVRNKSGGNQHMDFK-NRPQSSPTLKKIKTEPHSKNSSMVEDKSDTSY 365
           E KS+   L+     KSGG+   +   +R   SP   K++  PH+ + +M    S  SY
Sbjct: 39  EEKSSLIDLTES-EEKSGGSYSSNKNVSRADHSPVFGKVEPVPHTSSFNMGYLVSPYSY 96


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 177 LRKGYHWLLNYIIRRYGDINLRVQTDIHADLERRKRMLNKASNTNSQMSNSDDI 230
           ++K Y  +L +++     I+L  Q  ++ +L   K +LN  S+    +SN + +
Sbjct: 100 VQKFYVVILAFLLTAGAIISLVYQAPVYKELTDIKLVLNILSDVTLWLSNVNSL 153


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 177 LRKGYHWLLNYIIRRYGDINLRVQTDIHADLERRKRMLNKASNTNSQMSNSDDI 230
           ++K Y  +L +++     I+L  Q  ++ +L   K +LN  S+    +SN + +
Sbjct: 26  VQKFYVVILAFLLTAGAIISLVYQAPVYKELTDIKLVLNILSDVTLWLSNVNSL 79


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,082
Number of Sequences: 317
Number of extensions: 4531
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 114,650
effective HSP length: 59
effective length of query: 370
effective length of database: 95,947
effective search space: 35500390
effective search space used: 35500390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)