Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000149-TA|BGIBMGA000149-PA|IPR000938|CAP-Gly,
IPR001611|Leucine-rich repeat
         (532 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    26   0.57 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   4.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 0.57
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 250 YNRIDEIEXXXXXXXXXXXXXXDGNPITSWSEVMNLGALN-LKVLSLNDCLIAEIRFG 306
           YN +  +               +GNPIT+ S    LGA N L+ L+L +  +  +  G
Sbjct: 499 YNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLGAANQLEELNLKNIDLTVLESG 556


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 59  LDGIQYFKTSKPSAGSFVRPNKIIPSKTCAEAIRQYYGDPEDETLAAHRRTIINEW 114
           LDG+   KT    +  F   +   P  T +  +  ++G  +   ++ H  TI+ EW
Sbjct: 91  LDGLMLDKTGICVSNVFDFVHFYYPVATMSFYVLNFFGSIQFIIISKHWVTIMKEW 146


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,804
Number of Sequences: 317
Number of extensions: 4949
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 532
length of database: 114,650
effective HSP length: 60
effective length of query: 472
effective length of database: 95,630
effective search space: 45137360
effective search space used: 45137360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)