Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000149-TA|BGIBMGA000149-PA|IPR000938|CAP-Gly,
IPR001611|Leucine-rich repeat
(532 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15) 74 3e-13
SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32) 55 1e-07
SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19) 52 2e-06
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 50 4e-06
SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0) 49 1e-05
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 47 4e-05
SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39) 44 2e-04
SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17) 40 0.007
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.047
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.081
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 36 0.081
SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37) 34 0.25
SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06) 32 1.0
SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2) 31 3.1
SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08) 31 3.1
SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 29 7.1
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44) 29 9.4
>SB_8354| Best HMM Match : Pkinase (HMM E-Value=6.3e-15)
Length = 280
Score = 73.7 bits (173), Expect = 3e-13
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 39 KGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKIIPSKTCAEAIRQYYG 96
KG WYG+EWD+ RGKHDG +DG++YF+ ++GSFVR K+ + EA+R YG
Sbjct: 187 KGEWYGVEWDDPKRGKHDGSIDGVKYFECRHQTSGSFVREKKVSFGVSVVEALRSRYG 244
>SB_25835| Best HMM Match : CAP_GLY (HMM E-Value=2.9e-32)
Length = 640
Score = 55.2 bits (127), Expect = 1e-07
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 27 GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKI 81
G +R+IG + G W G+E D ++ GK+DG + G++YF KP GSFVRP+K+
Sbjct: 484 GVIRFIGATEFSPGPWVGVELD-KAGGKNDGSVSGVRYF-ACKPRFGSFVRPDKV 536
>SB_4343| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-19)
Length = 898
Score = 51.6 bits (118), Expect = 2e-06
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 17 GSRVKCNDDFGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFV 76
G RV GTV+++G + +G W GIE D E H+G +GIQYF KP G F
Sbjct: 67 GDRVHLRGYIGTVKFVGATELGQGDWVGIEMDKELNQGHNGSYEGIQYF-FCKPKHGVFA 125
Query: 77 R 77
R
Sbjct: 126 R 126
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 50.4 bits (115), Expect = 4e-06
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 10 NDNNVYIGSRVKCNDD-FGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTS 68
N +++ IG RV + + GT+RY+G + KG W G+E D E GK+DG + G +YF+
Sbjct: 238 NSSSLEIGDRVVVSGNKIGTLRYVGTTEFAKGEWAGVELD-EPLGKNDGAVAGTRYFQCI 296
Query: 69 KPSAGSFVRPNKII 82
+ G F +K+I
Sbjct: 297 Q-GYGLFAPVHKVI 309
Score = 43.6 bits (98), Expect = 4e-04
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 16 IGSRVKCNDDF-GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGS 74
+G RV N+ G + ++GE + KG W GI D+ + GK+DG + G +YF+ KP G
Sbjct: 158 VGDRVLVNNTKPGVIAFLGETKFAKGDWAGIILDDPT-GKNDGSVAGEKYFE-CKPLHGV 215
Query: 75 FVRPNKI 81
F + KI
Sbjct: 216 FTKLEKI 222
>SB_40639| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 709
Score = 48.8 bits (111), Expect = 1e-05
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 12 NNVYIGSRVKCNDD-FGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKP 70
N + IG RV G +R+ G + G W G+E D + GK+DG +DG+QYF+ +P
Sbjct: 388 NELTIGERVYIGGTKSGVLRFCGRTEFASGEWVGVELD-QPVGKNDGSVDGVQYFQ-CEP 445
Query: 71 SAGSFVRPNKIIPSKT 86
+ G F +K+ + T
Sbjct: 446 NHGIFAPASKVTRNGT 461
Score = 46.0 bits (104), Expect = 8e-05
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 27 GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKI 81
G V++IG+ Q G W GIE N GK+DG + G++YF T KP G F K+
Sbjct: 535 GIVQFIGQTQFASGWWLGIELSNPV-GKNDGSVGGVRYF-TCKPRFGVFAPVAKV 587
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 46.8 bits (106), Expect = 4e-05
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 27 GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKII 82
GTV Y+G Q G W G+ D E +GK+DG + G +YF + + G FVR ++II
Sbjct: 4 GTVAYVGATQFATGKWIGVVLD-EKKGKNDGTVQGKEYF-SCEDGYGIFVRQSQII 57
>SB_27800| Best HMM Match : CAP_GLY (HMM E-Value=2.5e-39)
Length = 246
Score = 44.4 bits (100), Expect = 2e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 27 GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFVRPNKI 81
G V ++G G W GI++D E GK+DG + G +YF+ P G FVRP +
Sbjct: 176 GEVMFVGTTDFKPGYWVGIKYD-EPLGKNDGSVAGKRYFQ-CPPKYGGFVRPKDV 228
>SB_1946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 40.3 bits (90), Expect = 0.004
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 166 LDVSRNLFSNWREVIQLSAQLPDLRDLDVSKNRMLIDAPTEILAQLSINFSKLEKINLS 224
+D+SRN SNW + L ++ +++S N+M DA +LA+ +N S LE ++L+
Sbjct: 475 IDLSRNNLSNWTRMTSTFDGLKSIKHINLSANKM-CDAGVGLLAKALVNLSNLEVLHLA 532
>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
Length = 560
Score = 39.5 bits (88), Expect = 0.007
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 17 GSRVKCNDDFGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFV 76
G RV GTV+++G +G+W GI D + + G YF+ +P G F
Sbjct: 86 GDRVHVRGYVGTVKFVGCTSLGEGVWVGIALDKQQPQGNSGSHQETSYFQ-CQPKHGLFA 144
Query: 77 RPNKIIP 83
RP + P
Sbjct: 145 RPGVVHP 151
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 36.7 bits (81), Expect = 0.047
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 14/164 (8%)
Query: 171 NLFSNWREVIQLSA--QLPDLRDLDVSKNRMLIDAPTEILAQLSINFSKLEKINLSVCDY 228
+L++N I +A L LR L++ NR+ + P + L+ L ++LS
Sbjct: 74 SLYNNLISTIHSNAFRNLTALRSLNLGANRLSV-LPRSVFRDLA----SLRSLDLSANRL 128
Query: 229 TWTDILKLSHLWPKIHEIIAAYNRIDEI-EXXXXXXXXXXXXXXDGNPITSWSEVMNLGA 287
+ L + ++ +NR+ I E N + ++SE G
Sbjct: 129 SSLPEDTFEGL-SSLQDLFLDFNRLRAIPETTFHGLAALQRLRLHNNNLKTFSERTLQGT 187
Query: 288 LNLKVLSLNDCLIAEIRFGDDWNQRVETFKNLEILFLNRNRIND 331
L+LK L LN+ L+ I G N R LEIL+LN N I +
Sbjct: 188 LSLKSLQLNNNLLTRIEPGTFRNLR-----GLEILYLNNNNITE 226
>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 35.9 bits (79), Expect = 0.081
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 154 GDVSSLCPNVRSLDVSRNLFSNWRE 178
G++ LCPNV LD+ N S+WRE
Sbjct: 68 GEIRELCPNVEELDLHTNKISDWRE 92
Score = 32.3 bits (70), Expect = 1.0
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 7/155 (4%)
Query: 178 EVIQLSAQLPDLRDLDVSKNRMLIDAP--TEILAQ-LSINFSKLEKINLSVCDYTWTDIL 234
EV + +QL L L++S N + + TE+L + + ++ L+ +
Sbjct: 139 EVFSILSQLQRLECLNLSNNPLPTEDTDFTELLTESCPSGVPPVRQLILNDTAVSLATTY 198
Query: 235 KLSHLWPKIHEIIAAYNRIDEIEXXXXXXXXXXXXXXDGNPITSWSEVMNLGALNLKVLS 294
KL P + + + N D I + + I W+E+ N+G + K
Sbjct: 199 KLLDCLPGVQVLFVSLNDYDTIPNTDKTYPSIKHLFMNNHAIQDWAEITNIGRIFPK--- 255
Query: 295 LNDCLIAEIRFGDDWNQRVETFKNLEILFLNRNRI 329
L + +++E ++ + E F NL L LN+ I
Sbjct: 256 LEELVMSESPI-ENISPTGELFPNLHTLKLNKTAI 289
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 35.9 bits (79), Expect = 0.081
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 16 IGSRVKC--NDDF--GTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKPS 71
+G RV C N G +++ G G W GI D ++ GK+DG + G++YF K
Sbjct: 237 LGDRVVCVLNKRLRTGLLQFTGTTHFSPGEWCGIVLD-DACGKNDGSVKGVRYF-DCKQD 294
Query: 72 AGSFVRPNKI 81
G FV +K+
Sbjct: 295 HGIFVHAHKV 304
>SB_31088| Best HMM Match : CAP_GLY (HMM E-Value=2.2e-37)
Length = 947
Score = 34.3 bits (75), Expect = 0.25
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 26 FGTVRYIGEVQGYKG-LWYGIEWDNESRGKHDGCLDGIQYFKTSKPSAGSFV 76
+G +R+IG++ K L G+E + E G DG G +YF+ P G FV
Sbjct: 571 YGVIRWIGQLAELKNKLVAGLELEEEQSGCSDGTFKGKRYFE-CPPGRGFFV 621
>SB_22886| Best HMM Match : LRR_1 (HMM E-Value=2e-06)
Length = 583
Score = 32.3 bits (70), Expect = 1.0
Identities = 15/34 (44%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 162 NVRSLDVSRNLFSNWREVIQLSAQLPDLRDLDVS 195
N+ SLDVS N+FS++ ++ Q+S + P+L +L++S
Sbjct: 155 NLTSLDVSHNMFSDF-DLKQISIKSPNLLELNIS 187
>SB_21961| Best HMM Match : FlaE (HMM E-Value=1.2)
Length = 816
Score = 30.7 bits (66), Expect = 3.1
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 374 LQELNGSIITGELRRGAEYDYLKRYGGE-WKVAQLDFEAKAAFDAEHCRFEELIRKYGIP 432
L +L+ GELR+ Y + YGG WKVA + AF + E+I+ P
Sbjct: 606 LNDLDNLTFYGELRQLLRY-IKENYGGAFWKVAMSGL-LECAFKGKPVETAEVIQP--TP 661
Query: 433 EDSLLVKLPKITTLTSQLLEVTLRDE-NGKSFKKKF 467
++ K P + T + E+++R++ K+ ++KF
Sbjct: 662 AVTVTSKEPVVATCKAVKKEMSIREKMTPKATRRKF 697
>SB_13886| Best HMM Match : 7tm_1 (HMM E-Value=1e-08)
Length = 536
Score = 30.7 bits (66), Expect = 3.1
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 162 NVRSLDVSRNLFSNWREVIQLSAQLPDLRDLDVSKNRMLIDAPTEILAQ-LSINFSKLEK 220
N+ SL++S N ++ EV +S LP L LD++ N L+ +L L I +KL K
Sbjct: 64 NLVSLNLSMNRIKSF-EVSNISTDLPSLAILDMTGNNWLLSNDILLLTSLLEIRGTKLSK 122
Query: 221 I 221
+
Sbjct: 123 M 123
>SB_6722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 30.3 bits (65), Expect = 4.0
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 11 DNNVYIGSRVKCNDDFGTVRYIGEVQGYKGLWYGIEWDNESRGKHDGCLDGIQYFKTSKP 70
+N Y+GS+ K D + + + Y IE R K++ + +F P
Sbjct: 157 NNAGYLGSQKKTVDKLEYTLQLHSRRNFHLTHYNIETLKYFRSKNNENISSNDHFPPPPP 216
Query: 71 SAGSFVRPNKIIPSKTCAEAIR 92
+ GS V N + P C R
Sbjct: 217 TQGSKVTVNALHPGLVCTNLFR 238
>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1608
Score = 29.9 bits (64), Expect = 5.4
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 183 SAQLPDLRDLDV-SKNRMLIDAPTEILAQLSINFSKLEKINLS----VCDYTWTDILKL- 236
S + P+L D + SK + + L+I + K++L C YT+T K+
Sbjct: 1173 SMRAPELSDYYIPSKTQKNAELAYIGAGALAIGYIASPKLHLGGLFPYCAYTYTYTYKIV 1232
Query: 237 -SHLWPKIHEIIAAYNRI 253
LW IHE+ AA R+
Sbjct: 1233 ADRLWSAIHEVAAAAKRV 1250
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 29.5 bits (63), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 160 CPNVRSLDVSRNLFSNWREVIQLSAQLPDLRDLDVS 195
CP+V SLDVS N L+ Q P ++ L++S
Sbjct: 279 CPDVESLDVSNNRLFQLDHFKDLATQAPGIKCLNLS 314
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 29.5 bits (63), Expect = 7.1
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 181 QLSAQLPDLRDLDVSKNRMLIDAPTEILAQLSINFSKLEKINLSVCDYTWTD 232
Q S Q ++ D + K+ LI E+L L I KL+K + DY+ D
Sbjct: 887 QASIQEKNVNDPRLDKDYSLIGLSDELLGGLEIEILKLDKTRQTFVDYSKVD 938
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 29.5 bits (63), Expect = 7.1
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 120 APFIEMVGFEKIHQKQKFDRLLEVCVHDQNVSRAGDVSSLCPNVRSLDVSRNLFSNWREV 179
+PF+ E+I +K +FD+++++C D ++R S C R++ + + + +V
Sbjct: 311 SPFL--AALEEIKEK-RFDKVIDLC--DDEINRG---PSPC-YARAMALRGTMHTLMSQV 361
Query: 180 IQLSAQLPDLRDLDVSKNRMLIDAPTEILAQLSINFSKLEKIN 222
+ L + D+D K I TE +A+ +F K K+N
Sbjct: 362 KEAIDDLTQVIDMDDDKASTKIHFLTEKIAEAKEDFEKSIKLN 404
>SB_41385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 29.5 bits (63), Expect = 7.1
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 140 LLEVCVHDQNVSRAG-DVSSLCPNVRSLDVSRNLFSNWREVIQLSAQLPDLRDLDVSKNR 198
L + ++D N++R D+S LC N+R LDVS N R + L LR+L +S N
Sbjct: 53 LTALFLNDNNLTRIPPDISRLC-NLRHLDVSSN---KLRSLPAEMGDLVTLRELLLSNNG 108
Query: 199 MLIDAPTEI 207
+ + P E+
Sbjct: 109 LRV-LPNEL 116
>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
Length = 851
Score = 29.1 bits (62), Expect = 9.4
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 121 PFIEMVGFEKIHQKQKFDRLLEVCVHDQNVSRAGDVSSLCPNVRSLDVSRNLFSNWREVI 180
P +E + + +++ ++ L+ + V A +S C N+ L +S + N ++
Sbjct: 136 PLLESLDLSEFGKEENHNQSLDENTDSKCVLIA--LSQCCSNLVELRLSLCPWVNSSALV 193
Query: 181 QLSAQLPDLRDLDVSKNRMLIDAPTEILAQLSINFSKLEKINLSVCDYT 229
+ L LD+S N L + E LAQ S SKL ++L C +T
Sbjct: 194 LVFKSCRKLEILDLSYNFNLNEDCLETLAQYS--SSKLRYLDLRNCSFT 240
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.137 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,840
Number of Sequences: 59808
Number of extensions: 686528
Number of successful extensions: 1447
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1421
Number of HSP's gapped (non-prelim): 33
length of query: 532
length of database: 16,821,457
effective HSP length: 85
effective length of query: 447
effective length of database: 11,737,777
effective search space: 5246786319
effective search space used: 5246786319
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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