GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000149-TA|BGIBMGA000149-PA|IPR000938|CAP-Gly,
IPR001611|Leucine-rich repeat
         (532 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            26   2.2  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   3.8  
AF515527-1|AAM61894.1|  211|Anopheles gambiae glutathione S-tran...    25   3.8  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 272 DGNPITSWSEVMNLGALNLKVLSLNDCLIAEIRFGDDWNQRVETFKNLEILFLNRN 327
           DGN   S S    LG   LK+L LN   +  +      N+     K LEIL L+ N
Sbjct: 800 DGNNFRSLSSHAFLGRKRLKILFLNGSNVETVS-----NRTFYGLKELEILQLDHN 850


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 410 EAKAAFDAEHCRFEELIRKYGIPEDSLLVKLPKITTLTSQLLEVTLRDE 458
           +AK  +D     +  LIR      D++LVKL       SQL+++ L+D+
Sbjct: 35  DAKRLYDDLLSNYNRLIRPVSNNTDTVLVKL---GLRLSQLIDLNLKDQ 80


>AF515527-1|AAM61894.1|  211|Anopheles gambiae glutathione
           S-transferase D10 protein.
          Length = 211

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 425 LIRKYGIPEDSLLVKLPKITTLTSQLLEVTLRDENGKSFK 464
           L+ KYG  +D+L  + PK+ ++ +Q L      +NG  FK
Sbjct: 71  LVEKYGNGDDALYPRGPKVRSVVNQRLFF----DNGLMFK 106


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,698
Number of Sequences: 2123
Number of extensions: 21269
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 3
length of query: 532
length of database: 516,269
effective HSP length: 67
effective length of query: 465
effective length of database: 374,028
effective search space: 173923020
effective search space used: 173923020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)