GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000149-TA|BGIBMGA000149-PA|IPR000938|CAP-Gly,
IPR001611|Leucine-rich repeat
         (532 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    29   0.096
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.39 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 0.096
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 272 DGNPITSWSEVMNLGALNLKVLSLNDCLIAEIRFGDDWNQRVETFKNLEILFLNRNRIND 331
           DGN +      + +G  N++VL +N   I  I+     N+      NL+IL L  NRI +
Sbjct: 802 DGNVLRELQNHVFIGRKNMRVLYVNGSGIESIQ-----NRTFNGLNNLQILHLEDNRIRE 856



 Score = 27.1 bits (57), Expect = 0.39
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 154 GDVSSLCPNVRSLDVSRNLFSNWREVIQLSAQLPDLRDLDVSKNRMLIDAPTEILAQLSI 213
           GD SS   ++R LD+SRN  +  +E   L   L  L++L + +N  +++   + L  L++
Sbjct: 205 GDESSCRADIRILDLSRNEITRLQENSPL-LDLRQLQELHLQRN-AIVEIAGDALTGLTV 262


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.39
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 405 AQLDFEAKAAFDAEHCRFEELIRKYGIPEDSLLVKLPKITTLTSQLLEVTLRDE 458
           A  + EAK  +D     +  LIR  G   D L VK+       SQL++V L+++
Sbjct: 15  ASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKM---GLRLSQLIDVNLKNQ 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,095
Number of Sequences: 429
Number of extensions: 5828
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 532
length of database: 140,377
effective HSP length: 61
effective length of query: 471
effective length of database: 114,208
effective search space: 53791968
effective search space used: 53791968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)