Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000148-TA|BGIBMGA000148-PA|IPR007087|Zinc finger,
C2H2-type
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    36   0.001
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    36   0.002
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    36   0.002
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    28   0.38 
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   0.50 
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   0.87 
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr...    26   1.2  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   2.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   3.5  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    24   4.7  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      24   4.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    24   4.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   6.2  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    23   8.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    23   8.1  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
          TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 49 DCGNKYKHKGSLQRHIKYECRKQPSFKCPY--CVYRAYQKHNLLLHER 94
          +CG KY     L++H++    ++P F C Y  C    Y+K +L +H+R
Sbjct: 29 ECGKKYSRPSLLEQHLRTHSNERP-FVCDYTGCSKAFYRKSHLKIHKR 75



 Score = 28.7 bits (61), Expect = 0.22
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 45  YECV--DCGNKYKHKGSLQRHIKYECRKQPSFKCPY--CV-YRAYQKHNLLL-HERHLH 97
           Y C   DC  ++  K  LQ H+     K  S+ CP+  CV +  ++K + L  H R  H
Sbjct: 144 YPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCPHESCVGHEGFEKWSQLQNHIREAH 202



 Score = 28.7 bits (61), Expect = 0.22
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 45  YECVDCGNKYKHKGSLQRHI-KYECRK 70
           + C  CG K+ +K  LQRH+ +  C+K
Sbjct: 267 FHCDSCGTKFGYKHMLQRHLERGTCKK 293



 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 50  CGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHERHLHKDMPEK 103
           C   +    +L++HI        +F C  C  +   KH L   +RHL +   +K
Sbjct: 243 CKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHML---QRHLERGTCKK 293


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 41  GWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHERHLH 97
           G   + C +C  K+K    L+RHI+     +  F C  C  R  ++ NL  HER LH
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQHER-LH 473


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 585

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 44 LYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHERHLHKD 99
          ++ C  C  ++    +L RH     + +P   CPYC  +  +K  L  H +  H D
Sbjct: 30 VFPCDQCAKRFTRHENLTRHKACHSKAEP-IPCPYCEIKCKRKDLLKRHIQRFHND 84


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query: 42  WTLYECVDCGNKYKHKGSLQRHIKYECRK 70
           W  Y C +CG  Y  KG    H +  C K
Sbjct: 108 WGKYACQNCGTSYCSKGCEVIHSETRCMK 136


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYECRKQPSFKC------PYCVYRAYQKHNLLL-HERHLH 97
           Y C  C   +     L+RHI+    ++P F C      P    R + + +LLL H++ +H
Sbjct: 70  YVCETCTRAFARLEHLKRHIRSHTNEKP-FTCSEIDGLPTGCGRQFSRRDLLLRHQQKIH 128

Query: 98  KD 99
           ++
Sbjct: 129 RN 130


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 0.87
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 32  TAGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPY--CVYRAYQKHNL 89
           T   S+  A    Y C +C   +    SL+ H      ++P F C Y  C      + N+
Sbjct: 455 TGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERP-FVCDYAGCGKAFNVRSNM 513

Query: 90  LLHER 94
             H+R
Sbjct: 514 RRHQR 518


>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 41  GWTLYECVDCGNKYKHKGSLQRHIKYECRKQ 71
           GW+  + +D   KY  +GS+  H+ Y  R +
Sbjct: 296 GWSSEDLLDWIWKYNKRGSIFSHVAYNSRHE 326


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 44   LYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYR 82
            + EC  C   Y H   L+   K + R+   F CP C YR
Sbjct: 1109 MIECEICHEWY-HAKCLKMS-KKKLRQDEKFTCPICDYR 1145


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 41  GWTLYECVDCGNKYKHKGSLQRHIKYE 67
           G   + CV C  ++    +L RH K E
Sbjct: 624 GIKAFACVTCNQRFARMDALNRHYKSE 650


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 34  GLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYE 67
           G+    +G+    C DC N +   G L    KY+
Sbjct: 191 GIVENMSGYICPHCADCTNIFSSGGGLTLSEKYK 224


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYEC----RKQPSFKCPYCVY----RAYQKHNLLLHERH 95
           ++C  C    +H G   R  K+ C     +Q S +C +C      +A   +N   HE H
Sbjct: 283 FKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPRCKHCKTPIEDQAVHINNDWFHENH 341


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHN 88
           Y+ +DC NK+  K      IKY  + + +  C    Y A +  N
Sbjct: 283 YQSLDCWNKFLEKEIDPSFIKYCTKLEVTAGCTLISYIADRLQN 326


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 43  TLYECVDCGNKYKHKGSLQRHIK--YECRKQPSFKCPYC 79
           +++ C  C + + H   +++  K   E R + +++CPYC
Sbjct: 209 SIWSCGTCYHVF-HLSCIRKWCKNSIEQRNEDAWRCPYC 246


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 55  KHKGSLQRHIKYECRKQPSFKCPYC 79
           K  G ++R +   CR  P   C YC
Sbjct: 129 KEDGLIRRSMTSLCRHGPKGMCDYC 153


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 44   LYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYR 82
            + EC  C   Y  K    +  K + R    F CP C YR
Sbjct: 1184 MIECELCHEWYHAK--CMKMSKKKLRADEKFICPICDYR 1220


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.141    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 593,114
Number of Sequences: 5004
Number of extensions: 24106
Number of successful extensions: 61
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 18
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)