Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000148-TA|BGIBMGA000148-PA|IPR007087|Zinc finger,
C2H2-type
(109 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0054 - 15456668-15459691 31 0.26
09_02_0366 + 7941550-7942161,7942230-7942775 28 1.8
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 27 2.4
06_03_0743 + 24069752-24070483,24071890-24072345 27 3.2
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 27 3.2
05_07_0110 - 27747789-27747897,27748375-27748568,27748811-277488... 27 3.2
09_04_0564 + 18565583-18566449,18569662-18570123 26 5.6
09_02_0226 - 6007656-6008063,6012166-6012678 26 5.6
08_02_1172 + 24898290-24899141,24900864-24901328 26 5.6
06_01_1119 - 9218735-9219529,9219809-9220330 26 5.6
02_02_0588 - 11881567-11881657,11882339-11882616,11883927-118840... 26 5.6
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 26 5.6
11_04_0184 - 14645630-14645905,14645997-14646701 26 7.4
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953... 26 7.4
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 26 7.4
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 26 7.4
08_02_1483 - 27451391-27451794,27451883-27452387 25 9.8
05_05_0022 + 21592403-21593083,21593720-21594208 25 9.8
05_04_0180 - 18797372-18798529 25 9.8
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 25 9.8
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 25 9.8
01_06_1412 - 37140654-37141088,37141549-37142214 25 9.8
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 29 GYGTAGL--SSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECR 69
GYG++ S+G+A WT+ CV+C KY++ ++ H K C+
Sbjct: 213 GYGSSVRPPSAGEAFWTM--CVNCKTKYQYYSNVLNH-KLRCQ 252
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ CV CG+ +KHK SL+ H++
Sbjct: 304 LWFCV-CGSDFKHKRSLKDHVR 324
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 5 PGFGTRHGGVAWLGVAQLYTPYMLGYGTAGLSSGKAG 41
PGFG GG+ W G + + TP +G G SG +G
Sbjct: 810 PGFGAHGGGLGWPG-SGVQTPV---FGAQGGGSGWSG 842
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 2 VHFPGFGTRHGGVAWLGVAQLYTPYMLGYGTAGLSSGKAGWTLYE 46
V PGFG + GG +W G + LG+ +G G++G +E
Sbjct: 851 VRRPGFGAQGGGSSWPGFGVQGSG--LGWPRSGGLGGRSGLPGFE 893
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C CG+ +KHK SL+ HI+
Sbjct: 337 LWYCA-CGSDFKHKRSLKDHIR 357
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 57 KGSLQRHIKYECRKQPSFKCPYC 79
KG L +H + RK P+++CP+C
Sbjct: 388 KGRLCKHYQLNLRK-PTWRCPFC 409
>05_07_0110 -
27747789-27747897,27748375-27748568,27748811-27748888,
27749925-27750064,27750197-27750269
Length = 197
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 71 QPSFKCPYCVYRAYQKHNLLLHERHLHKDMP 101
+P F CPYC Y+ H+++ HL ++ P
Sbjct: 39 RPEFACPYC----YEDHDVVSLCAHLEEEHP 65
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C+ CG+++KHK SL+ H +
Sbjct: 382 LWYCL-CGSEFKHKRSLKDHAR 402
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 50 CGNKYKHKGSLQRHIK 65
CG+ +KHK SL+ HI+
Sbjct: 269 CGSDFKHKRSLKDHIR 284
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C+ CG+++KHK SL+ H +
Sbjct: 377 LWYCL-CGSEFKHKRSLKDHAR 397
>06_01_1119 - 9218735-9219529,9219809-9220330
Length = 438
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 5 PGFGTRHGGVAWLGVAQLYTPYMLGYGTAGLSSGKAG---WTLY 45
PGF T H G +A ++PY++ TA SS A W LY
Sbjct: 187 PGFRTMHYGSHNFTIAVFWSPYLV---TANQSSDPAAGGLWDLY 227
>02_02_0588 -
11881567-11881657,11882339-11882616,11883927-11884066,
11884713-11884839
Length = 211
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 64 IKYECRKQPSFKCPYCVYRAYQKHNLLLHERHLHKDMP 101
++ E +P F CPYC Y+ H++ HL + P
Sbjct: 50 VEPEDEVRPDFPCPYC----YEDHDITSLCAHLEDEHP 83
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 17 LGVAQLYTPYMLGYGTAGLSSGKAGWTLYECVD 49
LGVA++ G+ + SG GW Y +D
Sbjct: 118 LGVARVVDSTHPGFSAGDIVSGMTGWEEYSLID 150
>11_04_0184 - 14645630-14645905,14645997-14646701
Length = 326
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 6 GFGTRHGGVAWLGVAQLYTPYMLGYGTAGLSSGKAG 41
G+GT A G L T + GYGT G G G
Sbjct: 132 GYGTTGVTGAQHGAGGLGTGHTAGYGTTGAHHGAGG 167
>11_03_0067 -
9535565-9536157,9536446-9536757,9536948-9537212,
9537810-9538048,9538400-9538568,9539216-9539410,
9539649-9539766,9542140-9542315
Length = 688
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 76 CPYCVYRAYQKHNLLLHERHLHKDMPEKVDFV 107
C + V + Y+K +L+E H++ EK+ FV
Sbjct: 241 CRWHVLKKYKKQLGVLYEMFKHRNFKEKLHFV 272
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 6 GFGTRHGGVAWLGVAQLYTPYMLGYGTAGLSSGKAG 41
G G+ +G + G A Y PY GY AG G G
Sbjct: 113 GSGSGYGSGSGYGQAGGYGPYGGGYAQAGGQGGGGG 148
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 50 CGNKYKHKGSLQRHIK 65
CG K+ K ++QRH+K
Sbjct: 124 CGRKFSIKANMQRHVK 139
>08_02_1483 - 27451391-27451794,27451883-27452387
Length = 302
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 31 GTAGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYE-CRKQPSFKC 76
G G G G C DCGN+ K + H++ C K F C
Sbjct: 78 GRGGGPGGSGGGGTISCQDCGNQAKKDCT---HLRCRTCCKSRGFDC 121
>05_05_0022 + 21592403-21593083,21593720-21594208
Length = 389
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 50 CGNKYKHKGSLQRHIK 65
CG+ +KHK SL H++
Sbjct: 328 CGSDFKHKRSLNDHVR 343
>05_04_0180 - 18797372-18798529
Length = 385
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 51 GNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLL 91
G KY H S ++++ +K+ + CP + R+ H+ LL
Sbjct: 269 GGKYAHSNSFSGNLRFPRQKRCAASCPSSM-RSSPSHSGLL 308
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
Query: 50 CGNKYKHKGSLQRHIK------YECRKQPSFKCP 77
C K+ KG++QRH++ C + F CP
Sbjct: 323 CNRKFTIKGNIQRHVQEMHKDGSPCESKKEFICP 356
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 50 CGNKYKHKGSLQRHIKYECRKQPSFKC 76
CGN + KG + ++ C +Q F C
Sbjct: 265 CGNAIRVKGDIHCEVECTCGRQFCFNC 291
>01_06_1412 - 37140654-37141088,37141549-37142214
Length = 366
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 50 CGNKYKHKGSLQRHIK 65
CG+ +KHK SL H++
Sbjct: 320 CGSDFKHKRSLNDHVR 335
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.141 0.478
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,581
Number of Sequences: 37544
Number of extensions: 159158
Number of successful extensions: 376
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 31
length of query: 109
length of database: 14,793,348
effective HSP length: 72
effective length of query: 37
effective length of database: 12,090,180
effective search space: 447336660
effective search space used: 447336660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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