GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000148-TA|BGIBMGA000148-PA|IPR007087|Zinc finger,
C2H2-type
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    44   3e-07
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    37   5e-05
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    30   0.007
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    30   0.007
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    26   0.088
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    26   0.12 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   0.82 
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   4.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 44.4 bits (100), Expect = 3e-07
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 36  SSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHERH 95
           S GK G   Y C  CG  +     L RH +    ++P ++C YC      K NL +H R 
Sbjct: 83  SHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKP-YQCEYCSKSFSVKENLSVHRRI 141

Query: 96  LHKDMPEKVD 105
             K+ P K D
Sbjct: 142 HTKERPYKCD 151



 Score = 37.1 bits (82), Expect = 5e-05
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHER 94
           Y+C  C   ++H G L RH++    ++P  KC  C     Q   L++H R
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIHTGERP-HKCTVCSKTFIQSGQLVIHMR 196



 Score = 24.6 bits (51), Expect = 0.27
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYECRK-QPSFKCPYCVYRAYQKHNLLLHERHLHKDMPEK 103
           Y+C+ C   +  K   Q H++   ++ +  ++C  C         L  H R    + P +
Sbjct: 62  YQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQ 121

Query: 104 VDFVSE 109
            ++ S+
Sbjct: 122 CEYCSK 127



 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 41  GWTLYECVDCGNKYKHKGSLQRHIK 65
           G  +Y+C  C   +  K +++ HIK
Sbjct: 256 GEKVYKCTLCHETFGSKKTMELHIK 280


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 37.1 bits (82), Expect = 5e-05
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 44  LYECVDCGNKYKHKGSLQRHIKYE-CRKQPSFKCPYCVYRAYQKHNLLLHERHLHKDMPE 102
           L+ C  CG     K SL+RH+  +   +Q  ++C  C      +++L+ H    HK  P 
Sbjct: 5   LFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPG 64

Query: 103 KVD 105
            +D
Sbjct: 65  DID 67


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 29.9 bits (64), Expect = 0.007
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 45 YECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHER 94
          +EC +C  ++     L+ H++    ++P + C +C  +  Q  NL  H R
Sbjct: 10 FECPECHKRFTRDHHLKTHMRLHTGEKP-YHCSHCDRQFVQVANLRRHLR 58



 Score = 26.6 bits (56), Expect = 0.067
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 45 YECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYC 79
          Y C  C  ++    +L+RH++    ++P + C  C
Sbjct: 38 YHCSHCDRQFVQVANLRRHLRVHTGERP-YACELC 71



 Score = 23.4 bits (48), Expect = 0.62
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 74 FKCPYCVYRAYQKHNLLLHERHLH 97
          F+CP C  R  + H+L  H R LH
Sbjct: 10 FECPECHKRFTRDHHLKTHMR-LH 32


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 29.9 bits (64), Expect = 0.007
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 45 YECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHER 94
          ++C  C     +K  L  H+K        ++C  C Y     H+L LH R
Sbjct: 17 FKCEKCSYSCVNKSMLNSHLKSHSNVY-QYRCANCTYATKYCHSLKLHLR 65


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 26.2 bits (55), Expect = 0.088
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 43 TLYECVDCGNKYKHKGSLQRH 63
          TLY C  C  +Y+ K SL  H
Sbjct: 34 TLYVCEFCNRRYRTKNSLTTH 54


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
          protein.
          Length = 81

 Score = 25.8 bits (54), Expect = 0.12
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 46 ECVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYC 79
          +C  CG  +     LQ HI+    ++P F C +C
Sbjct: 44 KCHLCGKAFSRPWLLQGHIRTHTGEKP-FSCQHC 76



 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 45 YECVDCGNKYKHKGSLQRHIK 65
          + C  C   Y   G+L+ HI+
Sbjct: 17 FSCKYCEKVYVSLGALKMHIR 37


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 0.82
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 45  YECVDCGNKYKHKGSLQRHIKYECRKQP--SFKCPYC--VYR---AYQKHNLLLHER 94
           Y C  CG     K +L+RH K +   QP  S  C  C  V+R   +   H  + H R
Sbjct: 372 YTCDVCGKTLSTKLTLKRH-KEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYHRR 427


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 16 WLGVAQLYTPYMLGYGTAGLSSG----KAGWTLYECVDCGNKY 54
          W+    L  P + G+G+ G  +G       W +++ V   + Y
Sbjct: 23 WIYALSLSLPPLFGWGSYGPEAGNVSCSVSWEVHDPVTNSDTY 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.141    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,841
Number of Sequences: 429
Number of extensions: 1700
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)