Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000148-TA|BGIBMGA000148-PA|IPR007087|Zinc finger,
C2H2-type
(109 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 29 0.51
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 29 0.90
At2g01620.1 68415.m00088 expressed protein 28 1.2
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 28 1.6
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 28 1.6
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 28 1.6
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 28 1.6
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 27 2.7
At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containi... 27 2.7
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 27 2.7
At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP tra... 27 3.6
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 26 4.8
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 26 4.8
At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identi... 26 6.3
At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identi... 26 6.3
At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identi... 26 6.3
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r... 26 6.3
At2g25680.1 68415.m03078 expressed protein ; expression supporte... 26 6.3
At5g43620.1 68418.m05332 S-locus protein-related contains some s... 25 8.4
At5g41030.1 68418.m04987 TCP family transcription factor, putati... 25 8.4
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 25 8.4
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr... 25 8.4
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr... 25 8.4
At3g21430.1 68416.m02704 expressed protein 25 8.4
At3g20350.1 68416.m02578 expressed protein 25 8.4
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ... 25 8.4
At1g01150.1 68414.m00024 expressed protein ; expression supporte... 25 8.4
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 29.5 bits (63), Expect = 0.51
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C+ CG+ +KHK SL+ HIK
Sbjct: 326 LWYCI-CGSDFKHKRSLKDHIK 346
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 28.7 bits (61), Expect = 0.90
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 24 TPYMLGYGTAGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQP 72
TP + G K + Y C++CGNK+ HK ++ ++ + P
Sbjct: 117 TPDSNEFECGGCEESKTSRSYYACLECGNKF-HKQCVESPLEIKHPSHP 164
>At2g01620.1 68415.m00088 expressed protein
Length = 292
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRH--IKYECRKQPSFKCPYCVYRA 83
L +C C Y S +RH + +PSF+C C YRA
Sbjct: 240 LPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECEACYYRA 281
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C CG+ +KHK SL+ H+K
Sbjct: 365 LWYC-SCGSDFKHKRSLKDHVK 385
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C CG+ +KHK SL+ H+K
Sbjct: 287 LWYC-SCGSDFKHKRSLKDHVK 307
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 47 CVDCGNKYKHKGSLQRHIK 65
CV CG+ +KHK SL+ H+K
Sbjct: 257 CV-CGSDFKHKRSLKDHVK 274
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ CV CG+ +KHK SL+ H++
Sbjct: 212 LWFCV-CGSDFKHKRSLKDHVR 232
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 44 LYECVDCGNKYKHKGSLQRHIKY-ECRKQPSFKCPYC 79
+ C DCG KY HK L+ ++ + S+ CP C
Sbjct: 165 MLSCKDCGKKY-HKNCLKSWAQHRDLFHWSSWSCPSC 200
>At3g02010.1 68416.m00162 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 825
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 84 YQKHNLLLHERHLHKDMPEKVDFVS 108
Y KH+ +L R L +MPE +DFVS
Sbjct: 295 YSKHDRVLETRMLFDEMPE-LDFVS 318
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 LYECVDCGNKYKHKGSLQRHIK 65
L+ C CG+ +KHK SL+ HI+
Sbjct: 290 LWYCT-CGSDFKHKRSLKDHIR 310
>At2g27760.1 68415.m03364 tRNA isopentenyltransferase 2 / IPP
transferase 2 (IPT2) identical to tRNA
isopentenyltransferase (IPT2) [Arabidopsis thaliana]
GI:14279058; identical to cDNA tRNA isopentenyl
transferase GI:12383201;
Length = 466
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 32 TAGLSSGKAGWTLYECVDCGNK 53
T+G S + WT Y C CGNK
Sbjct: 404 TSGKSIERDLWTQYVCEACGNK 425
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 49 DCGNKYKHKGSLQRHIKYECRKQPSFKCP 77
DC Y+ K L RH+ K FKCP
Sbjct: 100 DCAASYRRKDHLNRHLL--THKGKLFKCP 126
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 49 DCGNKYKHKGSLQRHIKYECRKQPSFKCP 77
DC Y+ K L RH+ K FKCP
Sbjct: 12 DCAASYRRKDHLNRHLL--THKGKLFKCP 38
>At5g12330.3 68418.m01451 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 226
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 33 AGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKC 76
+G SG +G C DCGN+ K K QR + C K F C
Sbjct: 100 SGSGSGASGTAT--CQDCGNQAK-KECKQRRCR-TCCKSRGFDC 139
>At5g12330.2 68418.m01450 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 33 AGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKC 76
+G SG +G C DCGN+ K K QR + C K F C
Sbjct: 100 SGSGSGASGTAT--CQDCGNQAK-KECKQRRCR-TCCKSRGFDC 139
>At5g12330.1 68418.m01449 lateral root primordium 1 (LRP1) identical
to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702)
Length = 320
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 33 AGLSSGKAGWTLYECVDCGNKYKHKGSLQRHIKYECRKQPSFKC 76
+G SG +G C DCGN+ K K QR + C K F C
Sbjct: 100 SGSGSGASGTAT--CQDCGNQAK-KECKQRRCR-TCCKSRGFDC 139
>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF04780:
Protein of unknown function (DUF629), PF04781: Protein
of unknown function (DUF627)
Length = 1122
Score = 25.8 bits (54), Expect = 6.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 42 WTLYECVDCGNKYKHKGSLQRHIKYE 67
WT + C +C K+ ++H++ E
Sbjct: 248 WTFWMCQNCSEKFSSAEECKKHLEQE 273
>At2g25680.1 68415.m03078 expressed protein ; expression supported
by MPSS
Length = 456
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 7 FGTRHGG-VAWLGVAQLYTPYMLGYGTAGL 35
FG R GG VA LGVA+L +LG G+
Sbjct: 344 FGGRSGGCVALLGVAKLVLGLVLGGSLVGI 373
>At5g43620.1 68418.m05332 S-locus protein-related contains some
similarity to S-locus protein 4 GI:6069478 from
[Brassica rapa]
Length = 410
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 46 ECVDCGNKYKHKGSLQRHIKYECRKQPSFK 75
+C CG ++K + +H+ + RK S K
Sbjct: 248 QCTSCGVRFKCQEEHSKHMDWHVRKNRSVK 277
>At5g41030.1 68418.m04987 TCP family transcription factor, putative
similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
Oryza sativa] ; similar to unknown protein
(emb|CAB61988.1)
Length = 243
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 53 KYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHE 93
K K K + RH+K E R + P C R YQ L H+
Sbjct: 62 KEKKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHK 102
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 36 SSGKAGWTLYECVDCGNKYKHKGSLQRH 63
S GKAG+ +Y+C C + +L H
Sbjct: 144 SGGKAGYYVYQCKTCDRTFPSFQALGGH 171
>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
protein contains Pfam PF01344: Kelch motif (2 copies)
and PF00646: F-box domain; similar to putative SKP1
interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
thaliana}|19798784|gb|AU230074.1|AU230074
Length = 372
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 25 PYMLGYGTAGLSSGKAGWTLYECVD 49
P + GYGT +SSG + + C+D
Sbjct: 122 PSIPGYGTTIISSGSETYVIGGCID 146
>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
protein contains Pfam PF01344: Kelch motif (2 copies)
and PF00646: F-box domain; similar to putative SKP1
interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
thaliana}|19798784|gb|AU230074.1|AU230074
Length = 372
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 25 PYMLGYGTAGLSSGKAGWTLYECVD 49
P + GYGT +SSG + + C+D
Sbjct: 122 PSIPGYGTTIISSGSETYVIGGCID 146
>At3g21430.1 68416.m02704 expressed protein
Length = 961
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 80 VYRAYQKHNLLLHERHLHKDMPEKVDFVS 108
VYRA Q LL + + + +M E +DFV+
Sbjct: 812 VYRAVQALELLRKDENNNVNMEEAIDFVN 840
>At3g20350.1 68416.m02578 expressed protein
Length = 673
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 54 YKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQK 86
++ S +H ++ C+ +PS P+C K
Sbjct: 152 FQSNNSRNKHSRFLCKHEPSVPFPHCAMEGATK 184
>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 367
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 47 CVDCGNKYKHKGSLQRHIKYECRKQPSFKCPYCVYRAYQKHNLLLHERHLHKDMPEKV 104
C C ++ + L +H +K FKC C + +++H +HK+ KV
Sbjct: 14 CYYCDREFDDEKILVQH-----QKAKHFKCHVCHKKLSTASGMVIHVLQVHKENVTKV 66
>At1g01150.1 68414.m00024 expressed protein ; expression supported
by MPSS
Length = 345
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 64 IKYECRKQPSFKCPYCVYRAYQKHNLLLHER 94
++ +C +F CPYC ++ + L R
Sbjct: 114 VELDCEDPATFYCPYCWFKEQATRSTALRTR 144
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.141 0.478
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,406
Number of Sequences: 28952
Number of extensions: 128218
Number of successful extensions: 276
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 31
length of query: 109
length of database: 12,070,560
effective HSP length: 71
effective length of query: 38
effective length of database: 10,014,968
effective search space: 380568784
effective search space used: 380568784
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)
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