GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000147-TA|BGIBMGA000147-PA|IPR007087|Zinc finger,
C2H2-type, IPR002086|Aldehyde dehydrogenase, IPR013069|BTB/POZ
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    44   4e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    37   0.005
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    34   0.039
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    32   0.12 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    32   0.12 
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    31   0.36 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.48 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    28   1.9  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   5.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    27   5.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   7.8  

>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 312 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHRD 366
           F C  C + +    +L  H+      EP   CPYC  + K+K  + RH++R H D
Sbjct: 31  FPCDQCAKRFTRHENLTRHKACHSKAEP-IPCPYCEIKCKRKDLLKRHIQRFHND 84



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 179 EPPPAEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHI 238
           EP   +  R F C  C KR+     L RH+   C  KA    CP+C         L  HI
Sbjct: 21  EPSLIDSKRVFPCDQCAKRFTRHENLTRHK--ACHSKAEPIPCPYCEIKCKRKDLLKRHI 78

Query: 239 RKHH 242
           ++ H
Sbjct: 79  QRFH 82


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 306 RTPDPGFAC--PDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERM 363
           R  DP F C  PDC + +  K  LR H++        F C +C     +   + RH+++M
Sbjct: 20  RLGDPRFYCTYPDCPKSFTRKEHLRRHERTH-ENVKAFSCSFCNRAFARSDVLNRHVQQM 78

Query: 364 H 364
           H
Sbjct: 79  H 79



 Score = 29.5 bits (63), Expect = 0.83
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 188 QFECRH--CGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTAE 245
           +F C +  C K +  K  LRRHE      K  A  C  C  A + +  L  H+++ H  +
Sbjct: 25  RFYCTYPDCPKSFTRKEHLRRHERTHENVK--AFSCSFCNRAFARSDVLNRHVQQMHLQK 82

Query: 246 WCLVGRR 252
             L  RR
Sbjct: 83  QNLSERR 89


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 33.9 bits (74), Expect = 0.039
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 312 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMH 364
           F CP+C + +K    LR H +     E  F C  C  R  ++ ++ +H ER+H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH-ERLH 473



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 196 KRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTAE---WCLVGRR 252
           KR + +    R  +V       +  CP C+     + +L  HIR  HT+E    C+ G+R
Sbjct: 400 KRRKRRQPSNRKTSVPRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKR 459



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 307 TPDPGFACPDCGRLYKLKSSLRNHQKWECGKEPQFQC 343
           T +  F C  CG+ +  + +LR H++      P+  C
Sbjct: 447 TSEKPFVCI-CGKRFSRRDNLRQHERLHVNASPRLAC 482



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 181 PPAEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRK 240
           P +   + F C  C K+++    LRRH       + P   C  C    S   NL  H R 
Sbjct: 415 PRSPGGKSFVCPECSKKFKRSEHLRRHIRSLHTSEKP-FVC-ICGKRFSRRDNLRQHERL 472

Query: 241 HHTA 244
           H  A
Sbjct: 473 HVNA 476


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 312 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPY--CVYRAKQKMHIARHMERMHRDLHL 369
           + CP C R++  +     H +   G++P F+C Y  C  R  ++  + RH+    R   +
Sbjct: 4   YECPFCKRVFHRQEHQVRHIRSHTGEKP-FECSYPSCKKRFTRRDELIRHVRTHLRKALV 62

Query: 370 KPDQ 373
            P+Q
Sbjct: 63  TPEQ 66


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 187 RQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTAEW 246
           R F+C  C K +  +   RRHE +  G KA A  C  C    +    L  H  K    + 
Sbjct: 598 RPFQCSICKKSFARQHDKRRHEQLHTGIKAFA--CVTCNQRFARMDALNRHY-KSEVGQN 654

Query: 247 CL--VGRRECVVPASERVAVSGST 268
           CL     R   VP S + AV+ ++
Sbjct: 655 CLRTATERGIQVPPSRKTAVASTS 678


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 226 TAPSSAANLGVHIRKHHT-----AEWCLVGRRECVVPASERVAVSGSTGGGEDVSFSRIG 280
           T P+  + L  ++R+ H      A++ +    EC++PA      S S+G  ED+ + + G
Sbjct: 123 TLPAYRSKLYKNVRRTHAEFKKFAKYLISTHPECLIPAVPEAKTSVSSGIKEDLIYLKSG 182

Query: 281 GLSW 284
             SW
Sbjct: 183 LQSW 186


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 194 CGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTAE 245
           C K +  K   RRH       KA    CPHC+++ + +  L  H+ + H  +
Sbjct: 24  CTKSFTRKEHARRHFRSHTNSKA--FICPHCSSSFTRSDVLNRHVNQKHVKQ 73


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 338 EPQFQCPYCVYRAKQKMHIARHMERMHRDLHL 369
           +P   CP C+ R K +      +E ++ D H+
Sbjct: 263 DPNTTCPQCMARRKMQQKYLAQIEELYEDFHV 294


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 189 FECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRK 240
           F C  CG ++ +K  L+RH       KA       C         + +H +K
Sbjct: 267 FHCDSCGTKFGYKHMLQRHLERGTCKKAHKPYINECGIKHDGIEGVAIHDQK 318


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 306  RTPDPGFA--CPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIAR----H 359
            R P+ G    C  C   Y  K    + +K     + +F CP C YR +   H  R     
Sbjct: 1177 RQPEAGMMIECELCHEWYHAKCMKMSKKKLRA--DEKFICPICDYRVEVPRHSHRPPLIE 1234

Query: 360  MERMHRDLHLKPDQYIK 376
            +++M  D+   P Q I+
Sbjct: 1235 LQKMVDDIPTLPFQPIE 1251


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 17/58 (29%), Positives = 21/58 (36%)

Query: 187 RQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTA 244
           R ++C  C K +       RH     G K      P CA   S +  L  H R H  A
Sbjct: 24  RPYKCPLCTKAFYRLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNA 81


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,938
Number of Sequences: 5004
Number of extensions: 51468
Number of successful extensions: 129
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 26
length of query: 384
length of database: 2,362,478
effective HSP length: 74
effective length of query: 310
effective length of database: 1,992,182
effective search space: 617576420
effective search space used: 617576420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)