Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000147-TA|BGIBMGA000147-PA|IPR007087|Zinc finger,
C2H2-type, IPR002086|Aldehyde dehydrogenase, IPR013069|BTB/POZ
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 36 0.072
03_02_0164 - 6066744-6067637 35 0.095
02_05_0202 + 26708049-26709074 34 0.17
04_01_0354 - 4646826-4647314 34 0.22
02_05_0521 - 29726985-29727605 34 0.22
11_08_0066 - 28131521-28132012 33 0.38
11_04_0142 + 14027726-14029081 32 0.67
09_02_0366 + 7941550-7942161,7942230-7942775 31 1.2
09_02_0226 - 6007656-6008063,6012166-6012678 31 1.2
09_04_0219 - 15774809-15775198 31 1.6
09_06_0357 + 22502660-22502876,22503433-22504577 31 2.1
05_05_0117 + 22503271-22503891 31 2.1
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393 31 2.1
12_02_0922 + 24356285-24356436,24356920-24356950,24358016-24358234 30 2.7
04_04_0157 + 23165638-23166633 30 2.7
05_03_0047 + 7793337-7793969 30 3.6
02_04_0257 + 21334560-21334566,21334809-21335326 30 3.6
12_02_0883 - 23982022-23982825 29 4.7
06_01_1068 + 8715714-8716799,8716899-8717159 29 4.7
04_04_0069 + 22506885-22508354 29 4.7
03_05_0198 + 21890523-21891002 29 4.7
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580 29 6.3
10_01_0358 - 3941313-3941328,3942374-3942693,3942774-3942912,394... 29 6.3
09_04_0564 + 18565583-18566449,18569662-18570123 29 6.3
08_02_1172 + 24898290-24899141,24900864-24901328 29 6.3
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214... 29 6.3
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 29 6.3
04_04_0007 + 22119477-22120004 29 6.3
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 29 8.3
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 35.5 bits (78), Expect = 0.072
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 187 RQFECRH--CGKRYRWKSTLRRHENVECGGKAPAHQCPH--CATAPSSAANLGVHIRKH 241
RQ+ C+ CGK++ S L+RH + G K CPH C A S NL H++ H
Sbjct: 114 RQYICQEPGCGKKFVDSSKLKRHHLIHTGQK--DFICPHPGCGKAFSLDFNLRSHLKTH 170
>03_02_0164 - 6066744-6067637
Length = 297
Score = 35.1 bits (77), Expect = 0.095
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 183 AEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCP-HCATAPSSAANLGVHIRKH 241
A+ +R+FEC +C + + L H+N + A + A A ++AA G H H
Sbjct: 95 ADSSRKFECHYCCRHFPTSQALGGHQNAHKRERQHAKRVQMQTAMAAAAAAASGAHHHHH 154
Query: 242 H 242
H
Sbjct: 155 H 155
>02_05_0202 + 26708049-26709074
Length = 341
Score = 34.3 bits (75), Expect = 0.17
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 214 GKAPAHQCPHCATAPSSAANLGVHIRKH 241
GKAP H+CP+C +S LG H + H
Sbjct: 257 GKAPPHECPYCYRVFASGQALGGHKKSH 284
>04_01_0354 - 4646826-4647314
Length = 162
Score = 33.9 bits (74), Expect = 0.22
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 176 LSDEPPPAEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANL 234
L PPP+ + + C +C + +R L H NV +A Q P+ P NL
Sbjct: 33 LQRSPPPSSSSSSYTCGYCRREFRSAQALGGHMNVHRRERARLRQFPNPRPHPLPNLNL 91
>02_05_0521 - 29726985-29727605
Length = 206
Score = 33.9 bits (74), Expect = 0.22
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 180 PPPAEPARQFECRHC---GKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAA 232
PPP P R+F C +C +R R++S LRRH G P A AA
Sbjct: 22 PPPPAPERRFCCPYCPEGPQRGRFRSHLRRHYRAAVRGMVRGGLAPRARLAVLRAA 77
>11_08_0066 - 28131521-28132012
Length = 163
Score = 33.1 bits (72), Expect = 0.38
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 21/118 (17%)
Query: 160 VQRALQLEYDDTDDIVLSDEPPPAEPARQ----------FECRHCGKRYRWKSTLRRHEN 209
VQ +L L T + S + AEP R+ FECR CG+R+ L H
Sbjct: 32 VQLSLSLACGSTTAMSSSGDEEDAEPRRRRRDEEAAAAAFECRTCGRRFPSHQALGGHRT 91
Query: 210 VEC---------GGKAP-AHQCPHCATAPSSAANLGVHIRKHHTAEWCLVGRRECVVP 257
G P H C C LG H+R+H L G ++ V+P
Sbjct: 92 SHLRPTTNKRRPGPSKPLIHACEVCGLGFQMGQALGGHMRRHRPRNIDL-GHKQIVMP 148
>11_04_0142 + 14027726-14029081
Length = 451
Score = 32.3 bits (70), Expect = 0.67
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 213 GGKAPAHQCPHCATAPSSAANLGVHIRKHHTAEWCLVGRRE 253
G + H+C C + LG H+RKH T E V +E
Sbjct: 273 GADSSKHRCRECGMEWKTGFALGGHMRKHQTKETVTVNEKE 313
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 31.5 bits (68), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 186 ARQFECRHCGKRYRWKSTLRRHENVECG 213
AR + CR CGKR+ + R HE CG
Sbjct: 276 ARPYACRRCGKRFAVRGDWRTHEK-NCG 302
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHRDLHLKP 371
FAC CG+ ++ R H+K CG+ ++ C C K K + H+ RD +P
Sbjct: 239 FACRKCGKPLAVRGDWRTHEK-NCGR--RWHCA-CGSDFKHKRSLKDHIRAFGRDHRERP 294
>09_04_0219 - 15774809-15775198
Length = 129
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 167 EYDDTDDIVLSDEPPPA-EPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCA 225
E D+ D+ LS +P A EP F C +C K++ L H+N ++ A + A
Sbjct: 13 EGDEQLDLNLSLQPSQANEPPGYFTCTYCDKKFYSSQALGGHQNAHKFERSVAKRTRELA 72
Query: 226 TA 227
A
Sbjct: 73 AA 74
>09_06_0357 + 22502660-22502876,22503433-22504577
Length = 453
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 172 DDIVLSDEPPPAEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCA 225
D + L D PPP + R+ + C + RW ++L N +Q CA
Sbjct: 93 DQLKLDDHPPPPQLHRR-RTKRCAEHLRWAASLASQHNATLLLTVDRNQAAGCA 145
>05_05_0117 + 22503271-22503891
Length = 206
Score = 30.7 bits (66), Expect = 2.1
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 183 AEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIR 239
A AR FECR CG+R+ L H + A + P A A G +R
Sbjct: 35 ARAARVFECRTCGRRFPTFQALGGHRASHKRPRHGAERAPRPAGDDDVGAGAGAALR 91
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 214 GKAPAHQCPHCATAPSSAANLGVHIRKHHTA 244
G AH CP C + LG H+R+H A
Sbjct: 115 GAGAAHGCPVCGLEFAVGQALGGHMRRHRAA 145
>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
Length = 322
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 186 ARQFECRHCGKRYRWKSTLRRHENVECG 213
AR F CR C KR+ + R HE CG
Sbjct: 245 ARDFACRRCAKRFAVRGDWRTHEK-NCG 271
>12_02_0922 + 24356285-24356436,24356920-24356950,24358016-24358234
Length = 133
Score = 30.3 bits (65), Expect = 2.7
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 202 STLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIR---KHHTAEWCLVGRRECVVPA 258
S LR+ + G K H P+ AANL V + + AEW RR C VP+
Sbjct: 48 SKLRKTTHTSFGSKLKCDG--HYQLHPAVAANLHVELDPAIESTVAEWS--PRRSCRVPS 103
Query: 259 SERVAVS-----GSTGGGEDVSFSR 278
SE AV +TGG ++F R
Sbjct: 104 SEMAAVCDLDSIATTGGLMGMAFHR 128
>04_04_0157 + 23165638-23166633
Length = 331
Score = 30.3 bits (65), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 181 PPAEPARQFECRHCGKRYRWKSTLRRH 207
P A A CR CG+R+R + TL RH
Sbjct: 96 PSAAAAAVHLCRVCGRRFRARDTLLRH 122
>05_03_0047 + 7793337-7793969
Length = 210
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 176 LSDEPPPAEPARQ--FECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAAN 233
+S PPPA + +EC C + + L H N+ +A P A P A+
Sbjct: 32 MSSSPPPATATARPYYECVFCKRGFTTAQALGGHMNIHRRDRAAKPAGPGAAAPPRDAST 91
Query: 234 LGV 236
V
Sbjct: 92 TAV 94
>02_04_0257 + 21334560-21334566,21334809-21335326
Length = 174
Score = 29.9 bits (64), Expect = 3.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 167 EYDDTDDIVLSDEPPPAEPAR---QFECRHCGKRYRWKSTLRRHEN 209
E D +++ LS P+ P+R +F C +C KR++ L H+N
Sbjct: 34 EQMDNEELNLSLSLQPSYPSRFQTEFSCCYCPKRFQSSQALGGHQN 79
>12_02_0883 - 23982022-23982825
Length = 267
Score = 29.5 bits (63), Expect = 4.7
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 185 PARQFECRHCGKRYRWKSTLRRHENVECGGKAPAH-QCPHCATAPSSAANLGVHI-RKHH 242
P +C C K + +S+ HE ++C H Q A +L VH+ R+
Sbjct: 6 PQENCQCSFCHKDFEGRSSCAEHE-LQCKNNPDVHSQTEPSGNAQGGIGSLDVHVPRRKR 64
Query: 243 TAEWCLVGRRECVVPASE 260
TA + + PAS+
Sbjct: 65 TARNQPLPEQHLKKPASD 82
>06_01_1068 + 8715714-8716799,8716899-8717159
Length = 448
Score = 29.5 bits (63), Expect = 4.7
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 327 LRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHRDLHLKP 371
LR +W C + F C C +H A + R H L L+P
Sbjct: 25 LRRRARWYCAADDAFLCQGC----DTSVHSANPLARRHERLRLRP 65
>04_04_0069 + 22506885-22508354
Length = 489
Score = 29.5 bits (63), Expect = 4.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 213 GGKAPAHQCPHCATAPSSAANLGVHIRKHHTAEWCLVGRRECVVPASER---VAVSGSTG 269
GG A A + A +P+SA G R + + GRR V ++ R +A G
Sbjct: 89 GGGAEASRRRGDAASPASATAGGAGGRSRRSGATAVAGRRAAVAGSATRRPWLAGDGEAA 148
Query: 270 GGEDV--SFSRIGGLSW 284
E V S+ + GLSW
Sbjct: 149 TAEIVPASWRLVAGLSW 165
>03_05_0198 + 21890523-21891002
Length = 159
Score = 29.5 bits (63), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 251 RRECVVPASERVAVSGSTGGGEDVSFSRIG-GLSWEQ 286
RR+ VV S V G +GGG ++ IG GL W +
Sbjct: 123 RRDTVVHGSASVPTRGGSGGGSGGAWIHIGAGLRWRE 159
>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
Length = 1101
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 346 CVYRAKQKMHIARHMERMHRDLHL 369
C Y ++ H RHM RMH+ LH+
Sbjct: 468 CFYPVEEYDHGGRHMYRMHKILHI 491
>10_01_0358 -
3941313-3941328,3942374-3942693,3942774-3942912,
3943441-3943543,3944745-3944890,3944941-3945314,
3946416-3946512,3947118-3947566
Length = 547
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 181 PPAEPARQFECRHCGKRYRWKSTLRRHEN 209
PP + F CR CGKR+ + + HE+
Sbjct: 36 PPKGRSSSFACRVCGKRFPSQQAMAGHED 64
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGK 337
F C CG+ + +K R H+K CGK
Sbjct: 357 FLCRKCGKAFAVKGDWRTHEK-NCGK 381
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGK 337
F C CG+ + +K R H+K CGK
Sbjct: 352 FLCRKCGKAFAVKGDWRTHEK-NCGK 376
>07_03_1094 +
23919878-23920520,23921297-23921363,23921364-23921453,
23922220-23922284,23922372-23922470,23922851-23922992,
23923100-23923139
Length = 381
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 183 AEPARQFECRHCGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHH 242
A+P +EC CGK Y L H+ +PA + P PSS G K H
Sbjct: 81 AKPQHGYECSVCGKVYGSYQALGGHKTSHRKPPSPAAE-PAAGEEPSSGGVAGE--AKVH 137
Query: 243 TAEWCL 248
CL
Sbjct: 138 RCSICL 143
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 182 PAEPARQFEC--RHCGKRYRWKSTLRRHE 208
P E ++F C +CGK +++ S L++HE
Sbjct: 346 PCESKKEFICPEENCGKTFKYASKLQKHE 374
Score = 28.7 bits (61), Expect = 8.3
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 312 FAC--PDCGRLYKLKSSLRNHQKWECGKEPQFQCPY--CVYRAKQKMHIARHMERMHRD 366
F+C C Y K L H GK F CP C + K +I RH++ MH+D
Sbjct: 287 FSCHVDGCPFSYSRKDHLNRHLLTHQGK--LFACPMEGCNRKFTIKGNIQRHVQEMHKD 343
>04_04_0007 + 22119477-22120004
Length = 175
Score = 29.1 bits (62), Expect = 6.3
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 176 LSDEPPPAEPARQFECRHCGKRYRWKSTLRRHEN--------VECGGKAPAHQCPHCATA 227
LS +P P F C +C +++R L H+N G +A A A A
Sbjct: 22 LSLQPSPPRFQALFSCCYCPRKFRSSQALGGHQNAHKLQRNLARRGREAAASLAAAAAAA 81
Query: 228 PSSAANLGVHIRKHHT--AEWCLVGRRECVVPASERVA 263
++AA+ G ++ T A ++ E PA+ R A
Sbjct: 82 AAAAASSGDQQQQGRTTAAAAAVLAGGESAPPAAARAA 119
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 28.7 bits (61), Expect = 8.3
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 221 CPHCATAPSSAANLGVHIRKHHTAEWCLVGRRECVVPASERVAVSGSTGGG 271
C C NL +H R+ H W LV R A + A G G G
Sbjct: 33 CEICGQGFQREQNLQMH-RRRHKVPWRLVKRPAAATAAEDGGAAGGGGGAG 82
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.134 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,403
Number of Sequences: 37544
Number of extensions: 440530
Number of successful extensions: 1253
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 56
length of query: 384
length of database: 14,793,348
effective HSP length: 83
effective length of query: 301
effective length of database: 11,677,196
effective search space: 3514835996
effective search space used: 3514835996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -