Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000147-TA|BGIBMGA000147-PA|IPR007087|Zinc finger,
C2H2-type, IPR002086|Aldehyde dehydrogenase, IPR013069|BTB/POZ
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein ... 32 0.56
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 32 0.74
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 32 0.74
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 31 1.3
At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containi... 31 1.7
At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4) ... 31 1.7
At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5) ... 30 2.3
At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zin... 29 3.9
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 29 5.2
At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein ... 29 6.9
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 28 9.1
At2g01620.1 68415.m00088 expressed protein 28 9.1
At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family prote... 28 9.1
At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3) ... 28 9.1
>At2g28710.1 68415.m03490 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 156
Score = 32.3 bits (70), Expect = 0.56
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 174 IVLSDEPPPAEPARQFECRHCGKRYRWKSTLRRHE-----NVECGGKAPA---------H 219
I+LS +R F C+ C K + L H + G AP H
Sbjct: 19 ILLSKAHQNDTKSRVFACKTCNKEFPSFQALGGHRASHRRSAALEGHAPPSPKRVKPVKH 78
Query: 220 QCPHCATAPSSAANLGVHIRKHHTAEWCLVGRRECVVPASERVAVSGSTGG 270
+CP C + LG H+RKH GR + PA+ V + S GG
Sbjct: 79 ECPICGAEFAVGQALGGHMRKHRGGSGGGGGR--SLAPATAPVTMKKSGGG 127
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 31.9 bits (69), Expect = 0.74
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 187 RQFECR--HCGKRYRWKSTLRRHENVECGGKAPAHQCP--HCATAPSSAANLGVHIRKHH 242
R F C C YR K L RH K +CP +C + S N+G H++K+H
Sbjct: 92 RSFTCYVDDCAASYRRKDHLNRHLLTH---KGKLFKCPKENCKSEFSVQGNVGRHVKKYH 148
Query: 243 T 243
+
Sbjct: 149 S 149
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 31.9 bits (69), Expect = 0.74
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 187 RQFECR--HCGKRYRWKSTLRRHENVECGGKAPAHQCP--HCATAPSSAANLGVHIRKHH 242
R F C C YR K L RH K +CP +C + S N+G H++K+H
Sbjct: 4 RSFTCYVDDCAASYRRKDHLNRHLLTH---KGKLFKCPKENCKSEFSVQGNVGRHVKKYH 60
Query: 243 T 243
+
Sbjct: 61 S 61
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 187 RQFECRH--CGKRYRWKSTLRRHENVECGGKAPAHQCPHCATAPSSAANLGVHIRKHHTA 244
RQ+ C CGK++ S L+RH + G + C A S NL H++ H
Sbjct: 106 RQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQE 165
Query: 245 EWCLVGRRECV 255
+ + CV
Sbjct: 166 NYHICPYSGCV 176
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 317 CGRLYKLKSSLRNHQKWECGKEPQFQCPY--CVYRAKQKMHIARHMERMH 364
CG+ + L +LR+H K +E CPY CV R + + H+ H
Sbjct: 145 CGKAFSLDFNLRSHMKTH-SQENYHICPYSGCVKRYAHEYKLKNHVAAYH 193
>At4g08210.1 68417.m01356 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 686
Score = 30.7 bits (66), Expect = 1.7
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 313 ACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHRDLHLKPD 372
AC G L + +S+L K E G EP + YCV + + + + + L+PD
Sbjct: 553 ACRHSGLLEEARSTLET-MKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPD 611
Query: 373 QYIKQDNVDAC 383
+ I + AC
Sbjct: 612 KTIWTSLLTAC 622
>At3g20880.1 68416.m02640 zinc finger (C2H2 type) protein (WIP4)
identical to WIP4 protein [Arabidopsis thaliana]
gi|18376500|emb|CAC86168; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 412
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGK 337
FAC CG+ + +K R H+K CGK
Sbjct: 340 FACRRCGKAFAVKGDWRTHEK-NCGK 364
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 187 RQFECRHCGKRYRWKSTLRRHENVECG 213
R F CR CGK + K R HE CG
Sbjct: 338 RPFACRRCGKAFAVKGDWRTHEK-NCG 363
>At1g51220.1 68414.m05761 zinc finger (C2H2 type) protein (WIP5)
identical to WIP5 protein [Arabidopsis thaliana]
gi|18376498|emb|CAC86167; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGK 337
FAC CG+ + +K R H+K CGK
Sbjct: 262 FACRMCGKAFAVKGDWRTHEK-NCGK 286
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 186 ARQFECRHCGKRYRWKSTLRRHENVECG 213
++ F CR CGK + K R HE CG
Sbjct: 259 SKPFACRMCGKAFAVKGDWRTHEK-NCG 285
>At1g34790.1 68414.m04337 transparent testa 1 protein (TT1) / zinc
finger (C2H2 type) protein TT1 identical to transparent
testa 1 GI:18253279 from [Arabidopsis thaliana];
contains Pfam profile PF00096: Zinc finger, C2H2 type
Length = 303
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGKEPQFQCPYCVYRAKQKMHIARHME 361
F+C CG+L +K R H+K CGK ++ C C K K + H++
Sbjct: 229 FSCRLCGKLLAVKGDWRTHEK-NCGK--RWVC-VCGSDFKHKRSLKDHVK 274
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 219 HQCPHCATAPSSAANLGVHIRKHHTA 244
H+C C + +S LG H+R+H TA
Sbjct: 188 HECSICGSEFTSGQALGGHMRRHRTA 213
>At1g02030.1 68414.m00123 zinc finger (C2H2 type) family protein
identical to C2H2 zinc finger protein ZAT1 [Arabidopsis
thaliana] gi|1418321|emb|CAA67227; contains Pfam domain,
PF00096: Zinc finger, C2H2 type
Length = 267
Score = 28.7 bits (61), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 219 HQCPHCATAPSSAANLGVHIRKHHTA 244
H+CP CA +S LG H R H +A
Sbjct: 209 HECPICAKVFTSGQALGGHKRSHASA 234
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc
finger
Length = 279
Score = 28.3 bits (60), Expect = 9.1
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 314 CPDCGRLYKLKSSLRNH--------QKWECGKEPQFQCPYCVYRAKQKMHIARHMERMHR 365
CP CG + +SL H +K G CP C + + + H+ER HR
Sbjct: 215 CPQCGAKFSSVTSLVEHVEKTHERNKKQNHGNVTVDVCPRCSRGFRDPVDLVNHIERDHR 274
>At2g01620.1 68415.m00088 expressed protein
Length = 292
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 314 CPDCGRLYKLKSSLRNHQK--WECGKEPQFQCPYCVYRA 350
C C + Y S R H+ + P F+C C YRA
Sbjct: 243 CRFCNKPYCTNHSSRRHEIAITDAASRPSFECEACYYRA 281
>At1g13820.1 68414.m01622 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 339
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 245 EWCLVGRRECVVPASERVAVSGSTGGGEDVS 275
+W +GR C+ P E VS T GG +V+
Sbjct: 232 DWTKIGRLHCLYPWWEDATVSFMTSGGYNVT 262
>At1g08290.1 68414.m00915 zinc finger (C2H2 type) protein (WIP3)
identical to WIP3 protein [Arabidopsis thaliana]
gi|18027014|gb|AAL55723; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 337
Score = 28.3 bits (60), Expect = 9.1
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 312 FACPDCGRLYKLKSSLRNHQKWECGK 337
F+C CG+ +K R H+K CGK
Sbjct: 265 FSCGKCGKALAVKGDWRTHEK-NCGK 289
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.134 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,184,185
Number of Sequences: 28952
Number of extensions: 301901
Number of successful extensions: 806
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 35
length of query: 384
length of database: 12,070,560
effective HSP length: 82
effective length of query: 302
effective length of database: 9,696,496
effective search space: 2928341792
effective search space used: 2928341792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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