GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000146-TA|BGIBMGA000146-PA|IPR000008|C2
calcium-dependent membrane targeting, IPR002219|Protein kinase C,
phorbol ester/diacylglycerol binding, IPR008973|C2
calcium/lipid-binding region, CaLB
         (534 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   7.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   7.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   7.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 393 PNRNVYSAGASPAQSGDESRTSRS 416
           PN +V S+  SP     +SRTS S
Sbjct: 141 PNCDVKSSVCSPGSGHQDSRTSPS 164


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 393 PNRNVYSAGASPAQSGDESRTSRS 416
           PN +V S+  SP     +SRTS S
Sbjct: 141 PNCDVKSSVCSPGSGHQDSRTSPS 164


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 393 PNRNVYSAGASPAQSGDESRTSRS 416
           PN +V S+  SP     +SRTS S
Sbjct: 141 PNCDVKSSVCSPGSGHQDSRTSPS 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,946
Number of Sequences: 317
Number of extensions: 4662
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 534
length of database: 114,650
effective HSP length: 60
effective length of query: 474
effective length of database: 95,630
effective search space: 45328620
effective search space used: 45328620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)