GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000145-TA|BGIBMGA000145-PA|undefined
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    32   0.053
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.38 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.87 
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   2.0  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   3.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   4.6  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   4.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   6.1  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   8.1  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 32.3 bits (70), Expect = 0.053
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 108 SAKVKSASFKPTKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVSVPTCTGGDQPSVQ 167
           S+   S S K T A G   +TP    +  + S     +  KKH+      C   + P  +
Sbjct: 318 SSNSSSLSLKSTLAEGMKGSTPLAAVKTEKASKAARVMKQKKHREHVCFNCGVTETPLWR 377

Query: 168 WVNDVLTWLYNDLVIVNEL--VQQWISSMNEFSKKSVEEVL 206
             +D L +L N   + N+   V + +S  N+ S K++E ++
Sbjct: 378 RTSDKLNFLCNACGLYNKQYGVMRPLSPRNKGSSKALENLV 418


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 76  AKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPA 127
           AK  +  D        ++ + +VSSA S L+ SA   SAS   + ++   PA
Sbjct: 245 AKTASTDDSSSASSATSSVSSVVSSASSALSASASSASASVSSSASSDASPA 296


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 79  TTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRM 138
           +TD     I    N T+EI  S+ S+ +  + + S      K++ FV  T       G +
Sbjct: 600 STDYSSSLITVCSNVTSEI--SSTSLASLISTLTSQQISSNKSSEFVGQTTTEYTTSGSV 657

Query: 139 SPGPEQLTVKKHQSVSVPTCTGGDQPSVQWVNDVLT 174
                  T    QS SVP     D P+  W+ + +T
Sbjct: 658 G----FTTTLATQSGSVPGTVLVDVPTPSWITETVT 689


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 81  DADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKK 133
           D+ + K+D +KNT      +   VL T  K  S      +    +P+   +KK
Sbjct: 17  DSAENKVDSSKNTEANFPITLPKVLPTDPKASSLHKPQEQQPNIIPSKEEDKK 69


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 174 TWLYNDLVIVNELVQQWISSMNEFSKKSVEEVLEV 208
           T +Y+  + ++  + +W+SSM   S ++ EE+  V
Sbjct: 500 TLVYSLFISISPFLFRWLSSMQGLSSRAEEEIYAV 534


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%)

Query: 77  KKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLG 136
           K+T   DK  + E K  +     S+ S    + K  +   KP K++   P  P NK    
Sbjct: 413 KETNKIDKLYVSENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPPVPENKAEDS 472

Query: 137 RMSPGPEQLTVKKHQSVSVPTCTGG-DQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMN 195
            +          ++   S P+ T G  + ++   + V      D V++   V +  S  +
Sbjct: 473 VVLKSSVPEDKSENSIASKPSATEGIPENAIALQSSVPENKAEDSVVLKSSVPEDKSEDS 532

Query: 196 EFSKKSVEE 204
             SK SV E
Sbjct: 533 VPSKSSVLE 541


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 93  TTNEIVSS-ADSVLATSAKVKSASFKPTKATGFVPATPPNKKRL 135
           ++N + SS + S ++ S+ V+S + KPTKA+G V +    K+ L
Sbjct: 219 SSNSVKSSPSKSFVSISSPVQS-TVKPTKASGVVKSEKVEKRSL 261


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 103 SVLATSAKVKSASFKPTKATGFVPATPPNKKR 134
           +VL  +  + S SF P K T  +   PP  KR
Sbjct: 425 AVLQKTDPINSRSFDPKKYTASMEILPPENKR 456


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 165 SVQWVNDVLTWLYNDLVIVNELVQQWISS------MNEFSKKSVEEVLE 207
           +V+++ D+L W++  +V   ELV+   ++      +N F    V  VLE
Sbjct: 295 TVRFIGDLLAWIHQTIVNEKELVEALFAARKRQIQLNPFPPWDVPNVLE 343


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 98  VSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSPGPEQL 145
           +SSADS +    +V   S+   K  GF+   P   KR     PG  QL
Sbjct: 337 ISSADSDIRR--RVFWGSYVADKFIGFIMGRPTMLKRSDASIPGSNQL 382


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 76  AKKTTDADKPKIDETKNTTNE-IVSSADSVLATS--AKVKSASFKPTKATGFVPATPPNK 132
           A+K+   ++ + +E  +T N+  VSS+  V+A +  A   SAS KP+ ++    +   +K
Sbjct: 327 AEKSFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTKSSNSKSK 386

Query: 133 KRLGRMS 139
           K++  +S
Sbjct: 387 KKVTSIS 393


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 881,138
Number of Sequences: 5004
Number of extensions: 34276
Number of successful extensions: 146
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 12
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)