Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000145-TA|BGIBMGA000145-PA|undefined
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855... 29 3.6
07_03_1796 + 29609818-29610274,29610427-29610908,29611547-296117... 29 3.6
02_02_0034 - 6246183-6246553,6246672-6249699 29 3.6
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 28 4.8
06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255 28 6.3
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 6.3
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 27 8.4
>09_02_0397 -
8549273-8549380,8549718-8549765,8549875-8549964,
8550479-8550562,8551119-8551280,8551729-8551781,
8552763-8552807,8553840-8553876,8554212-8554320,
8554391-8554818,8554939-8555085
Length = 436
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 77 KKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKAT 122
K+ T + P + + K TN VSS V+ TS + +A K + T
Sbjct: 127 KENTVSTNPCVSDEKAATNSNVSSGHGVILTSVEADAAEDKGCRHT 172
>07_03_1796 +
29609818-29610274,29610427-29610908,29611547-29611755,
29612111-29612177,29612252-29612302
Length = 421
Score = 28.7 bits (61), Expect = 3.6
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 10/134 (7%)
Query: 77 KKTTDADKPKIDETKNTTNEIVSSADSVL-ATSAKVKSASFKPTKATGFVPATPPNKKRL 135
K+ +AD+P+ D T++ + + +++S L +S ++S TGF+ P +
Sbjct: 225 KQNAEADRPQQDSTRHQQDSVQGASNSQLKESSVTMESIRGTGPDITGFMEEATP--RVA 282
Query: 136 GRMSPGPEQLTVKKHQSVSVPTCTGGDQPSVQWVNDVLTWLYNDLVIVNELVQ-QWISSM 194
G+ +P +K HQ P+ L N +V+ + + + QW S
Sbjct: 283 GQFAPD----NIKNHQVTGSKRSLMERNPTASTYEG--EHLCNIMVVSHRIFEVQWDGSD 336
Query: 195 NEFSKKSVEEVLEV 208
+E + + + L +
Sbjct: 337 SEGKRPAAKRRLPI 350
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 95 NEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVS 154
N + S V A +A ++ S K TG +P T N L R+S L +S+S
Sbjct: 280 NNLAGSIPPVTAIAAPIQFLSLTQNKLTGGIPPTLGNLSSLVRLSLAANNLVGSIPESLS 339
>02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 157 TCTGGDQPSVQWVNDVLTWLYNDLVIVNE---LVQQWISSMNEFSKKSVEEVLEV 208
T G QP++Q ++D+L + + V E ++ I +NE S+K V++++++
Sbjct: 1829 TTEGQQQPTLQLISDLLNSITVAMERVAEEKYMLLNKIRDLNELSRKEVDDIIKL 1883
>06_01_0455 - 3241217-3243176,3244426-3244670,3244869-3245255
Length = 863
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 148 KKHQSVSVPTCTGGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKKSVEEVLE 207
K ++ + + + D+ S+Q+++ L + Y+D+ L W S+ + S+ +
Sbjct: 657 KSYEKIFISSLNALDRHSLQYLDLSLYYSYSDIAAKRFLFDSWFPSLKNLRRLSIVNGFK 716
Query: 208 VT 209
T
Sbjct: 717 TT 718
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 126 PATPPNKKRLGRMSPGPEQLTVKKHQSVSVPTCTGGDQP 164
PA P++ G G E++ V+++ P C GG P
Sbjct: 18 PAASPSRHPPGEEGGGAERVEVEEYVDPPSPDCCGGADP 56
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 85 PKIDETKNT-TNEIVSSADSVLATSAKVKSASFKPTKATGFVPATP--PNKKRLGRMSPG 141
P+I N + SS S ++ + K+ + KP A ++P +L M PG
Sbjct: 418 PEISSAGNRRSGSSESSLKSPVSQLSSSKALTSKPVAADAAAKSSPVISGSSKLQHMQPG 477
Query: 142 PEQLTVKKHQSVSVPTCTGGDQPSVQ 167
+K+ S S G + P+V+
Sbjct: 478 NAVTNLKEQPSKSTGGTCGSELPAVK 503
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.128 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,623,426
Number of Sequences: 37544
Number of extensions: 218957
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 8
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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