Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000145-TA|BGIBMGA000145-PA|undefined
(209 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical pr... 38 0.007
U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical pr... 38 0.007
U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical pr... 38 0.007
U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 35 0.049
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ... 31 0.80
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z35597-3|CAA84646.2| 498|Caenorhabditis elegans Hypothetical pr... 29 3.2
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 29 3.2
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 29 3.2
AL033536-5|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 3.2
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 29 3.2
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 29 3.2
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 29 3.2
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 4.3
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical pr... 27 7.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 7.4
AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein. 27 7.4
AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical ... 27 7.4
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 27 7.4
Z92815-2|CAB07293.2| 476|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z92815-1|CAB07292.2| 530|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z92785-1|CAB07198.1| 632|Caenorhabditis elegans Hypothetical pr... 27 9.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.8
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 27 9.8
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.8
>U41016-5|AAP46274.1| 811|Caenorhabditis elegans Hypothetical
protein R11G1.6c protein.
Length = 811
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 160 GGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKK 200
G S +W N++++WLY++ V + WI S+NE +KK
Sbjct: 48 GTHTSSGEWSNEIVSWLYSNFHKVPAPMDAWIKSLNEAAKK 88
>U41016-4|AAP46275.1| 809|Caenorhabditis elegans Hypothetical
protein R11G1.6d protein.
Length = 809
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 160 GGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKK 200
G S +W N++++WLY++ V + WI S+NE +KK
Sbjct: 48 GTHTSSGEWSNEIVSWLYSNFHKVPAPMDAWIKSLNEAAKK 88
>U41016-3|AAM51497.1| 901|Caenorhabditis elegans Hypothetical
protein R11G1.6b protein.
Length = 901
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 160 GGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKK 200
G S +W N++++WLY++ V + WI S+NE +KK
Sbjct: 138 GTHTSSGEWSNEIVSWLYSNFHKVPAPMDAWIKSLNEAAKK 178
>U41016-2|AAM51496.1| 899|Caenorhabditis elegans Hypothetical
protein R11G1.6a protein.
Length = 899
Score = 37.5 bits (83), Expect = 0.007
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 160 GGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKK 200
G S +W N++++WLY++ V + WI S+NE +KK
Sbjct: 138 GTHTSSGEWSNEIVSWLYSNFHKVPAPMDAWIKSLNEAAKK 178
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 34.7 bits (76), Expect = 0.049
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 74 RFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKS---ASFKPTKATGFVPATP- 129
R + T+D D P I++ K T + + +VLA ++ +S F FVP P
Sbjct: 125 RSIRLTSDRDTPTIEKKKFTLHSFTQNLSAVLADPSRSRSDLTTFFTRHWGDSFVPTQPV 184
Query: 130 PNKKRLGRMS 139
P KRL R++
Sbjct: 185 PQSKRLARLA 194
>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
protein H04J21.1 protein.
Length = 1032
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 50 LVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSA 109
+V+L+ + + + +AI K+ + A+K D +KP +D+ K + S S S
Sbjct: 858 IVILIIVVVSIGVAIPFAIKYKKKKAAEKLEDLEKP-VDKKKKKGKKSKDSKKSAEKKST 916
Query: 110 KVKSASFKPTKA 121
+ SA PT +
Sbjct: 917 EKSSAMTAPTNS 928
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 174 TWLYNDLVIVNELVQQWISSMNEFSKKSVEEVLEV 208
+W YN+ I E VQ + ++E+S S+ +V++V
Sbjct: 175 SWTYNENEIKLEFVQAELVDVSEYSASSIWDVIDV 209
>Z35597-3|CAA84646.2| 498|Caenorhabditis elegans Hypothetical
protein C36E8.3 protein.
Length = 498
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 118 PTKATGFVPATPPNKKRLGRMSPGPEQ-LTVKKHQSVSVPTCTGGDQPSVQWVNDVLTWL 176
P FVP +P K+R R +P P++ L ++ + T P V+ ND++
Sbjct: 47 PNAEQEFVPLSPV-KRRTARAAPIPKRSLASEQEDEEDIDPATATIPPDVEVKNDMIDHQ 105
Query: 177 Y---NDLVIVNELVQQWISSMNEFSKK 200
Y V E ++++ ++ +F KK
Sbjct: 106 YYQAETFVGDGETLKKYWINVEQFMKK 132
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 174 TWLYNDLVIVNELVQQWISSMNEFSKKSVEEVLEV 208
+W YN+ I E VQ + ++E+S S+ +V++V
Sbjct: 175 SWTYNENEIKLEFVQAELVDVSEYSASSIWDVIDV 209
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 174 TWLYNDLVIVNELVQQWISSMNEFSKKSVEEVLEV 208
+W YN+ I E VQ + ++E+S S+ +V++V
Sbjct: 175 SWTYNENEIKLEFVQAELVDVSEYSASSIWDVIDV 209
>AL033536-5|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 79 TTDADKPKIDETKNTTNEIVSSAD-SVLATSAKVKSASFKPTKATGFVPATPPNKKRLGR 137
+T D P +D+T T+ S+ +T + + F GF + ++
Sbjct: 714 STATDSPTMDDTSKTSTVTSEGTTLSIESTESSASPSDFTTPDFIGFTSSVSRTSEQYSS 773
Query: 138 MSPGPEQLTVKKHQSVSVPT 157
SP + T+ +VS T
Sbjct: 774 SSPSSDTTTMDVTSTVSTTT 793
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 67 IAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSAD 102
+AKW + KKT++A KP T +TN +VS D
Sbjct: 1722 LAKWVEEKDKKKTSEAPKPHKSST-YSTNGLVSFCD 1756
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 67 IAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSAD 102
+AKW + KKT++A KP T +TN +VS D
Sbjct: 1760 LAKWVEEKDKKKTSEAPKPHKSST-YSTNGLVSFCD 1794
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 67 IAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSAD 102
+AKW + KKT++A KP T +TN +VS D
Sbjct: 1722 LAKWVEEKDKKKTSEAPKPHKSST-YSTNGLVSFCD 1756
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 28.3 bits (60), Expect = 4.3
Identities = 22/130 (16%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 76 AKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRL 135
A +T D P I ++ + + S +A + +S + +T +P+ P +
Sbjct: 667 ATQTADCGLPHISSNDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRPYF 726
Query: 136 GRMSPGPEQLTVKKHQSVSVPTCTGGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMN 195
+ E+ T ++ +V +PS++ +ND L L + ++ E+ Q+ + + +
Sbjct: 727 LK-----EEYTSLANKP-TVQVAPFSQEPSLKTINDRLNALRQNSILAQEVPQEPVMTSS 780
Query: 196 EFSKKSVEEV 205
++ + +
Sbjct: 781 RLRSEATKSL 790
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 76 AKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPN 131
A T + P + T T + +S T+ KS+S P K+T P T P+
Sbjct: 414 APTTESSAIPDVTSTTTTKSSTTPPVEST-TTAPVTKSSSTPPVKSTTIAPVTMPS 468
>Z77663-4|CAB01213.1| 605|Caenorhabditis elegans Hypothetical
protein F53F4.4 protein.
Length = 605
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 76 AKKTTDADKPKID---------ETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFV 125
AK TTD KP+++ + KNTT VS + V+AT+ K K + T V
Sbjct: 158 AKVTTDGSKPEVNMLVKTSLNVDDKNTTLG-VSKEEEVIATTESTKEKKLKSGEVTSHV 215
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 65 IAIAKWAYGRFAKKTTDA-DKPKIDETKNTTNEIVSSADSVLATSAKVKSAS-----FKP 118
+ ++K A ++TT+ D P+ + TKN + EI + ++ T++ +AS F
Sbjct: 352 MTLSKTAATETTQQTTEVTDGPEKETTKNVSIEIPITTVPLVETTSTTSTASKESDGFHT 411
Query: 119 TKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVSVPTCTG 160
T A + + + P E+ T K H V PT G
Sbjct: 412 TLKLKVTTADSDSTESATTVKPFNEETTTKSH-VVPKPTKKG 452
>AY255668-1|AAQ96605.1| 167|Caenorhabditis elegans MiRP5 protein.
Length = 167
Score = 27.5 bits (58), Expect = 7.4
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 51 VMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSAK 110
V++ I +L +A I A + ++ K +PK K+T + S A + K
Sbjct: 23 VVIFIIIGILIVAFIVFAAASIVKYIKSKKQQKQPKKKTKKSTKSRSKSLKSKQSAVTPK 82
Query: 111 VKSASFKP---------------TKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVSV 155
+++ P T ++ F P+T P ++ G E T K Q
Sbjct: 83 KRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPTVPDKVDDGSED-TEHKEQEQQT 141
Query: 156 PTCTGGD 162
CT G+
Sbjct: 142 VLCTYGN 148
>AF098994-1|AAC67472.2| 167|Caenorhabditis elegans Hypothetical
protein T06A4.2 protein.
Length = 167
Score = 27.5 bits (58), Expect = 7.4
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 51 VMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSAK 110
V++ I +L +A I A + ++ K +PK K+T + S A + K
Sbjct: 23 VVIFIIIGILIVAFIVFAAASIVKYIKSKKQQKQPKKKTKKSTKSRSKSLKSKQSAVTPK 82
Query: 111 VKSASFKP---------------TKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVSV 155
+++ P T ++ F P+T P ++ G E T K Q
Sbjct: 83 KRASPIPPQPAPPSSPKPTEESATPSSSFAPSTEPTPTVPDKVDDGSED-TEHKEQEQQT 141
Query: 156 PTCTGGD 162
CT G+
Sbjct: 142 VLCTYGN 148
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 95 NEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVS 154
N ++S+ V+ +A+V+ KP A V ATPP K + P + ++ S S
Sbjct: 768 NRVMSTRKRVVEEAAEVQK---KPNPAPSGVTATPPKKAKTSNSVPPNKMVSAASTPSSS 824
>Z92815-2|CAB07293.2| 476|Caenorhabditis elegans Hypothetical
protein W01F3.1b protein.
Length = 476
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 78 KTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVP 126
K D D PKI KN+ + + T+ ++K+ + TK+ G +P
Sbjct: 335 KVQDIDSPKI---KNSLEVFIGFDGKIKITNGQLKNLPYYETKSVGQLP 380
>Z92815-1|CAB07292.2| 530|Caenorhabditis elegans Hypothetical
protein W01F3.1a protein.
Length = 530
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 78 KTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVP 126
K D D PKI KN+ + + T+ ++K+ + TK+ G +P
Sbjct: 389 KVQDIDSPKI---KNSLEVFIGFDGKIKITNGQLKNLPYYETKSVGQLP 434
>Z92785-1|CAB07198.1| 632|Caenorhabditis elegans Hypothetical
protein F31E9.1 protein.
Length = 632
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 179 DLVIVNELVQQWIS--SMNEFSKKSVEEVLEV 208
+L+ VN+LVQ + +MN FSKK VE +++V
Sbjct: 234 ELLPVNQLVQFHLIEVTMNLFSKKDVEIIMQV 265
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 3153 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 3212
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 3213 GGSAPDVEWFKD 3224
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 82 ADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSPG 141
A+K K ++ +++ EI+ D+ A + +SA T T ++ + + P
Sbjct: 259 AEKKKKPDSSSSSEEIILIDDNAPAAKKQPESAQKGSTTVTMSAKKICKQQEEIAKQKPS 318
Query: 142 PEQLTVKKHQSVSVPTCTGGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKKS 201
+T K + PT + + + + L ++ +L +L Q+ + F ++
Sbjct: 319 SSSVTPSK---PAAPTASTPKKEEIGTLETFLKNIFANLDAKGKLYQE--KKLKTFDTET 373
Query: 202 VEEV 205
++E+
Sbjct: 374 LKEI 377
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 2513 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 2572
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 2573 GGSAPDVEWFKD 2584
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 3153 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 3212
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 3213 GGSAPDVEWFKD 3224
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 3153 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 3212
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 3213 GGSAPDVEWFKD 3224
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 2513 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 2572
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 2573 GGSAPDVEWFKD 2584
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 104 VLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSP----GPEQLTVKKHQSVSVPTCT 159
V++ K S+K AT +K +P G ++ +VK+ + + +
Sbjct: 3153 VISQITKEDIVSYKAIATNSIGTATSTSKITTKVEAPVFEQGLKKTSVKEKEEIKMEVKV 3212
Query: 160 GGDQPSVQWVND 171
GG P V+W D
Sbjct: 3213 GGSAPDVEWFKD 3224
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.128 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,763,296
Number of Sequences: 27539
Number of extensions: 190771
Number of successful extensions: 753
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 35
length of query: 209
length of database: 12,573,161
effective HSP length: 78
effective length of query: 131
effective length of database: 10,425,119
effective search space: 1365690589
effective search space used: 1365690589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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