GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000145-TA|BGIBMGA000145-PA|undefined
         (209 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/77 (16%), Positives = 33/77 (42%)

Query: 38  CSFDYMDTAMDNLVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKNTTNEI 97
           CSFDY+    +  + +  I+       + +  + Y +      + +K   ++ K    + 
Sbjct: 197 CSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDS 256

Query: 98  VSSADSVLATSAKVKSA 114
           + S  +  + SA+++ A
Sbjct: 257 LRSNANTSSQSAEIRIA 273


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 50  LVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDETKNT 93
           LVML F W + + A+        G    K++     + DE + T
Sbjct: 261 LVMLFFYWRIYNAAVSTTKAINQGFRTTKSSKMFGSRFDEERLT 304


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 131 NKKRLGRMSPGPEQLTVKKHQSVSV-PTCTG 160
           N++    + PG     VK+H+S S   TC+G
Sbjct: 264 NRQLNSDVQPGHGSPPVKQHRSSSASTTCSG 294


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,848
Number of Sequences: 429
Number of extensions: 2464
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 140,377
effective HSP length: 55
effective length of query: 154
effective length of database: 116,782
effective search space: 17984428
effective search space used: 17984428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)