GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000145-TA|BGIBMGA000145-PA|undefined
         (209 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13550.1 68415.m01494 expressed protein                             31   0.57 
At2g38910.1 68415.m04783 calcium-dependent protein kinase, putat...    30   0.99 
At5g36020.1 68418.m04339 hypothetical protein similar to At5g281...    29   1.7  
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    29   3.0  
At3g52230.1 68416.m05739 expressed protein                             29   3.0  
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    28   5.3  
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote...    27   9.2  
At3g62610.1 68416.m07033 myb family transcription factor similar...    27   9.2  
At3g46900.1 68416.m05090 copper transporter, putative similar to...    27   9.2  
At3g15770.1 68416.m01997 expressed protein This may be a pseudog...    27   9.2  

>At2g13550.1 68415.m01494 expressed protein 
          Length = 181

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 116 FKPTKATGFVPATPPNKKRLGRMSPGPEQLTVKKHQSVSVPTCTG 160
           F+P   TG  P +PPN       SP P+Q   ++H + S P   G
Sbjct: 19  FQPNTRTGRQPKSPPNSHHPDESSPSPQQ---ERHITRSEPITRG 60


>At2g38910.1 68415.m04783 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase, isoform AK1 (CDPK) [Arabidopsis thaliana]
           SWISS-PROT:Q06850; contains protein kinase domain,
           Pfam:PF00069; contains EF hand domain (calcium-binding
           EF-hand), Pfam:PF00036, INTERPRO:IPR002048
          Length = 583

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 77  KKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLG 136
           +K  D+ K   DE+    N+   + D    ++  V S++  P  +T   P+TPP   ++ 
Sbjct: 27  QKPDDSIKSSKDESSRKKNDKSVNGDD---SNGHV-SSTVDPAPSTLPTPSTPPPPVKMA 82

Query: 137 RMSPGPEQLTVKKHQSVSVP 156
              P P+ +T  K    S P
Sbjct: 83  NEEPPPKPITENKEDPNSKP 102


>At5g36020.1 68418.m04339 hypothetical protein similar to At5g28170,
           At1g35110, At1g44880, At3g42530, At4g19320, At4g03970,
           At3g43010, At2g10350
          Length = 721

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 68  AKWAYG-RFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTK--ATGF 124
           +K +Y  RF +    +D  K     +  N++   ++ V+    K K+ +FK ++  A GF
Sbjct: 264 SKHSYSTRFNQVVRLSDDEKSRLIVDLQNKVEELSNRVMKLEKKRKTVTFKRSRNLAFGF 323

Query: 125 VPATPPNKKRLGRMSPGPEQLTVKKHQS 152
           VP++  +K++  +    P Q    +HQS
Sbjct: 324 VPSSSRSKRK--KSLEVPTQSQASEHQS 349


>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 74  RFAKKTTDADKPKIDETKNTTNEIVSSADSVLATSAKVKSASFKPTKA-TGFV---PATP 129
           R   ++  A   K   T+  + E+ S+ DS    + K  + +  P +  + F+   P+TP
Sbjct: 7   RLLSRSVAAASSKSVTTRAFSTELPSTLDSTFVEAWKKVAPNMDPPQTPSAFMKPRPSTP 66

Query: 130 ---PNKKRLGRMSPGPEQLTVKKHQSVSVPTCTG 160
              P K  +  + P   +LT K+   V +P  TG
Sbjct: 67  SSIPTKLTVNFVLPYTSELTGKEVDMVIIPASTG 100


>At3g52230.1 68416.m05739 expressed protein
          Length = 145

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 54  VFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKI--DETKNTTNEIVSSAD 102
           V +W V ++    + KWA+ R+ ++   +DK +   D+ +   +E   S+D
Sbjct: 91  VILWQVYALGGFLVLKWAWARWNERNERSDKKEATGDDDQKDDDEDDQSSD 141


>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 143 EQLTVKKHQSVSVPTC-TGGDQPSVQWVNDVLTWL 176
           +Q   + HQS   P   +GGD     WV D+L W+
Sbjct: 96  QQQQQQHHQSQQQPRGGSGGDDVKTLWVGDLLHWM 130


>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
           kinase, putative similar to Z. mays leucine-rich repeat
           transmembrane protein kinase LRRTPK 1, GenBank accession
           number AF023164
          Length = 776

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 85  PKIDETKNTTNE-IVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMSPGP 142
           PK     N  N  +++S  +  + S  +      PT+    VP  PPN++  G+++ GP
Sbjct: 238 PKFLHEGNPFNATMINSTSTAPSLSPSLSPTKPAPTRPFSGVPP-PPNERNRGKVADGP 295


>At3g62610.1 68416.m07033 myb family transcription factor similar to
           myb-like transcription factor GI:168590 from [Zea mays]
          Length = 343

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 93  TTNEIVSSADSVLATSAKVKSASFKPTKATGFVPATPPNKKRLGRMS 139
           T NEI +  +S L  S K+     KPT A     A PP K+R GR S
Sbjct: 100 TDNEIKNYWNSHL--SRKLHGYFRKPTVANTVENAPPPPKRRPGRTS 144


>At3g46900.1 68416.m05090 copper transporter, putative similar to
           SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
           thaliana}; contains Pfam profile PF04145: Ctr copper
           transporter family
          Length = 158

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 43  MDTAMDNLVMLVFIWMVLSIAIIAIAKWAYGRFAKKTTDADKPKIDE 89
           + T +  LVML  +     + I+AIA +  G F   +T   KP  D+
Sbjct: 98  LKTGLSYLVMLAVMSFNAGVFIVAIAGYGVGFFLFGSTTFKKPSDDQ 144


>At3g15770.1 68416.m01997 expressed protein This may be a
           pseudogene.  A stop codon is found directly after the
           presumed correct start codon.  The longest ORF is
           provided here.
          Length = 162

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 152 SVSVPTCTGGDQPSVQWVNDVLTWLYNDLVIVNELVQQWISSMNEFSKKSV 202
           S+S    T   Q      N+   ++ + LV+ N+  QQW+      S+KSV
Sbjct: 66  SISTTNLTIDSQGCGSSSNEPAEFVNHGLVLWNQTRQQWVGDKRSESRKSV 116


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.128    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,542,223
Number of Sequences: 28952
Number of extensions: 175979
Number of successful extensions: 612
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 10
length of query: 209
length of database: 12,070,560
effective HSP length: 78
effective length of query: 131
effective length of database: 9,812,304
effective search space: 1285411824
effective search space used: 1285411824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)