Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000144-TA|BGIBMGA000144-PA|IPR011009|Protein
kinase-like, IPR000719|Protein kinase, IPR002290|Serine/threonine
protein kinase, IPR001180|Citron-like
         (1136 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    49   2e-07
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   1.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   1.7  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   9.0  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 11/180 (6%)

Query: 88  MCRETLMGLTYLHGMGKMHRDIKGANILLTECGDVKLADFGVSAQITATINKRKSFIGTR 147
           + R+  +G+ +L     +HRD+   N+L+ E   VK++DFG+S  +       K+  G  
Sbjct: 597 IARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCKNGGGKL 656

Query: 148 --YWMAPEVAAVERKGGYNQLCDIWACGITAIELAEL-QPPMFELHPMRVLFLMSKSGFK 204
              WMA E    +R   Y    D+W+ G+   E+  L   P   +H   +L  + KSG  
Sbjct: 657 PVRWMALESLTHQR---YTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFL-KSG-- 710

Query: 205 PPQLRDKERWSQLFHGFLKLALTKNPKKRPTAQKLLQH-PFFLQEMSKRLAIELLQKYSN 263
             +L      S   +  +     + PK RPT  +L +     L+ +++ L IE +++  N
Sbjct: 711 -NRLARPANCSPDLYAVMLNCWKECPKNRPTFTELSKSLEGLLENVAQYLQIENVEQTLN 769


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)

Query: 141 KSFIGTRYWMAPEVAAVERKGGYNQLCDIWACG 173
           +S IG +  +A E A  ER+GGY+   DIW  G
Sbjct: 355 RSNIGVK--IALEAATTEREGGYH---DIWMSG 382


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)

Query: 141 KSFIGTRYWMAPEVAAVERKGGYNQLCDIWACG 173
           +S IG +  +A E A  ER+GGY+   DIW  G
Sbjct: 355 RSNIGVK--IALEAATTEREGGYH---DIWMSG 382


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 559 QIANSLSMADDETRNGSVSDDDLCRRIDMS 588
           ++ + LS  DD+  N +V DDD   R  +S
Sbjct: 27  EVEHRLSDRDDDDENITVDDDDTDGRESLS 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 253,808
Number of Sequences: 317
Number of extensions: 10336
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 4
length of query: 1136
length of database: 114,650
effective HSP length: 64
effective length of query: 1072
effective length of database: 94,362
effective search space: 101156064
effective search space used: 101156064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)